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Conserved domains on  [gi|1236517408|ref|YP_009412886|]
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ATP synthase F0 subunit 6 (mitochondrion) [Microcebus jollyae]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-225 1.57e-127

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 359.27  E-value: 1.57e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIG 79
Cdd:MTH00101    1 MNENLFASFITPTiLGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  80 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRL 159
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517408 160 TANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-225 1.57e-127

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 359.27  E-value: 1.57e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIG 79
Cdd:MTH00101    1 MNENLFASFITPTiLGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  80 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRL 159
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517408 160 TANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-224 8.89e-48

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 156.60  E-value: 8.89e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   6 FASFIIPTMGVPIVIFIIMFPSIFLHNpyrLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLG 85
Cdd:TIGR01131  12 LFSLTLLSLILLLSLLIFLISSSLSRW---LIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  86 LLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITA 165
Cdd:TIGR01131  89 LIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISA 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236517408 166 GHLLIHLIGGATMVLTSISptVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDN 224
Cdd:TIGR01131 169 GHLLLTLLSGLLFSLMSSA--IFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 64-221 1.33e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 125.97  E-value: 1.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  64 GRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIII 143
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517408 144 ETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSIsptVSSITFTILILLTILEFAVALIQAYVFTLLVSLYL 221
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
18-222 4.97e-34

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 121.06  E-value: 4.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  18 IVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMA-IHNVKGRTWSLMLMSLILFIGSTNLLGLL---PHSFTP 93
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  94 TTQLSMNLGMAIPLWAATVIMGFR-HKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLIHL 172
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKkHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1236517408 173 IGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLH 222
Cdd:pfam00119 167 LAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-223 2.48e-22

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 90.52  E-value: 2.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  39 NRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRH 118
Cdd:COG0356    29 GGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKK 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408 119 K-MKSSLAHFLPQGTPIPLIPMLIIiETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSisptvSSITFTILIL 197
Cdd:COG0356   109 KgLGGYLKHLFFPPFPWLAPLMLPI-EIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLL-----GVLSLLLPVA 182

                         170       180
                  ....*....|....*....|....*.
gi 1236517408 198 LTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:COG0356   183 WTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-225 1.57e-127

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 359.27  E-value: 1.57e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIG 79
Cdd:MTH00101    1 MNENLFASFITPTiLGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  80 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRL 159
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517408 160 TANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-225 4.13e-82

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 244.35  E-value: 4.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPTM-GVPIVIFIIMFPSIFL-HNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFI 78
Cdd:MTH00120    1 MNLNFFDQFSSPELlGIPLILLAMLIPALLIpSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  79 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVR 158
Cdd:MTH00120   81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517408 159 LTANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00120  161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-225 1.49e-79

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 237.94  E-value: 1.49e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPY-RLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFI 78
Cdd:MTH00073    1 MNLSFFDQFLSPTlLGIPLIMLAMLLPWLLFPTPTnKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  79 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVR 158
Cdd:MTH00073   81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517408 159 LTANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00073  161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-224 1.04e-76

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 230.53  E-value: 1.04e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPY-RLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFI 78
Cdd:MTH00132    1 MTLSFFDQFMSPTyLGIPLIALALTLPWILFPTPTsRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  79 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVR 158
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517408 159 LTANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDN 224
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-225 8.31e-65

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 200.17  E-value: 8.31e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPY-RLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFI 78
Cdd:MTH00179    1 MMLSMFDQFESPSlLGIPLLALALLLPWLLFPSLTnRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  79 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVR 158
Cdd:MTH00179   81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517408 159 LTANITAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00179  161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-224 8.89e-48

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 156.60  E-value: 8.89e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   6 FASFIIPTMGVPIVIFIIMFPSIFLHNpyrLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLG 85
Cdd:TIGR01131  12 LFSLTLLSLILLLSLLIFLISSSLSRW---LIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  86 LLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITA 165
Cdd:TIGR01131  89 LIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISA 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236517408 166 GHLLIHLIGGATMVLTSISptVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDN 224
Cdd:TIGR01131 169 GHLLLTLLSGLLFSLMSSA--IFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-224 1.81e-43

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 145.89  E-value: 1.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPTMG-VPIVIF--IIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILF 77
Cdd:MTH00035    3 INNSIFGQFSPDTILfIPLTLLssVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  78 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAV 157
Cdd:MTH00035   83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517408 158 RLTANITAGHLLIHLIGGATMVLTSiSPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDN 224
Cdd:MTH00035  163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-220 5.21e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 136.84  E-value: 5.21e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   1 MNENLFASFIIPT-MGVPIVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIG 79
Cdd:MTH00157    1 MMTNLFSIFDPSTsFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  80 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRL 159
Cdd:MTH00157   81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236517408 160 TANITAGHLLIHLIGGATMVLTSISptvSSITFTILILLTILEFAVALIQAYVFTLLVSLY 220
Cdd:MTH00157  161 AANMIAGHLLLTLLGNTGPSLSSMI---LSILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 64-221 1.33e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 125.97  E-value: 1.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  64 GRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIII 143
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517408 144 ETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSIsptVSSITFTILILLTILEFAVALIQAYVFTLLVSLYL 221
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
18-222 4.97e-34

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 121.06  E-value: 4.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  18 IVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMA-IHNVKGRTWSLMLMSLILFIGSTNLLGLL---PHSFTP 93
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  94 TTQLSMNLGMAIPLWAATVIMGFR-HKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLIHL 172
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKkHGLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1236517408 173 IGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLH 222
Cdd:pfam00119 167 LAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 5-225 1.93e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 120.14  E-value: 1.93e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   5 LFASFIIPTMGVPIvIFIIMFPSIFLHNPYRLigNRLMSLQQWLIKLVLKQMMAihnVKGRTWSLMLMSLILFIGSTNLL 84
Cdd:MTH00176   15 NIFSMISLSWITLL-LFLLLMPSSVWFCPSKL--QVFMLMFSTFLPEMILRSNG---SYILGSASIIISLFILVMSLNLS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  85 GLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANIT 164
Cdd:MTH00176   89 GLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLS 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236517408 165 AGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00176  169 AGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 24-223 8.21e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 118.43  E-value: 8.21e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  24 MFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGM 103
Cdd:MTH00173   28 LMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408 104 AIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSI 183
Cdd:MTH00173  108 ALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFS 187

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1236517408 184 SPTVSS-ITFTILILLTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:MTH00173  188 SSVVSLlLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 4-225 2.94e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 101.35  E-value: 2.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408   4 NLFASFIIPTMGVPIVIFIIMFPSIFLHNPyrligNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNL 83
Cdd:MTH00005   15 SLFNNLSSTAFWAFNFSIILLLSSSFWITP-----NRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  84 LGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANI 163
Cdd:MTH00005   90 SGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANM 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236517408 164 TAGHLLIHLIGGATMVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 225
Cdd:MTH00005  170 SAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 18-223 5.44e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 100.50  E-value: 5.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  18 IVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQL 97
Cdd:MTH00172   22 IMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLFPYVFTPTTHI 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  98 SMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLIHLIGGAT 177
Cdd:MTH00172  102 VVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGFG 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1236517408 178 MVLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:MTH00172  182 FNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 18-223 3.04e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 98.93  E-value: 3.04e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  18 IVIFIIMFPSIFLHNPyRLIGNRLMSLQQwLIKLVLKQMMAIH-NVKGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQ 96
Cdd:MTH00175   34 MMVLAVIIFWLLLKGD-KLIPNRWQSIME-LIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAH 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  97 LSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLIHLIGGA 176
Cdd:MTH00175  112 IIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGF 191

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1236517408 177 TM-VLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:MTH00175  192 AFnMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-223 2.48e-22

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 90.52  E-value: 2.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  39 NRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRH 118
Cdd:COG0356    29 GGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKK 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408 119 K-MKSSLAHFLPQGTPIPLIPMLIIiETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSisptvSSITFTILIL 197
Cdd:COG0356   109 KgLGGYLKHLFFPPFPWLAPLMLPI-EIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLL-----GVLSLLLPVA 182

                         170       180
                  ....*....|....*....|....*.
gi 1236517408 198 LTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:COG0356   183 WTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 18-223 1.03e-19

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 83.69  E-value: 1.03e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  18 IVIFIIMFPSIFLHNPYRLIGNRLMSLQQWLIKLVLKQMMAIHNVKGRTWSLMLMSLILFIGSTNLLGLLP-HSFTPTTQ 96
Cdd:PRK05815   23 LGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTAD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  97 LSMNLGMAIPLWAATVIMGFR-HKMKSSLAHFLPQGTPIPLIPmliiiETISLFIQPMALAVRLTANITAGHLLIHLIGG 175
Cdd:PRK05815  103 INVTLALALIVFVLVIYYGIKkKGLGGYLKEFYLQPHPLLLPI-----EIISEFSRPISLSLRLFGNMLAGELILALIAL 177

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1236517408 176 atmvLTSISPTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYLHD 223
Cdd:PRK05815  178 ----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 71-221 3.53e-19

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 84.41  E-value: 3.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  71 LMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFR-HKMKSSLAHfLPQGTPIPLIPMLIIIETISLF 149
Cdd:PRK13419  174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236517408 150 IQPMALAVRLTANITAGHLLI-HLIGGATMVLTSISPTVSSITFTILILLtiLEFAVALIQAYVFTLLVSLYL 221
Cdd:PRK13419  253 TKPFALTVRLFANMTAGHIVIlSLIFISFILKSYIVAVAVSVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 63-223 3.41e-17

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 77.67  E-value: 3.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  63 KGRTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLII 142
Cdd:MTH00174   86 KGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTI 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408 143 IETISLFIQPMALAVRLTANITAGHLLIHLIGGATMVLTSISPTVSS-ITFTILILLTILEFAVALIQAYVFTLLVSLYL 221
Cdd:MTH00174  166 IETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSfVPFAILIFVTILEMAVAIIQAYVFTLLTIVYL 245


                  ..
gi 1236517408 222 HD 223
Cdd:MTH00174  246 RD 247
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 73-221 4.27e-08

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 51.52  E-value: 4.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  73 SLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSlaHFLPQGT-PIPLIPMLIIIETISLFIQ 151
Cdd:MTH00087   57 FTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSdSFLKTFSMLFVEIVSELSR 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408 152 PMALAVRLTANITAGHLLIHLIGgatmvltsispTVSSITFTILILLTILEFAVALIQAYVFTLLVSLYL 221
Cdd:MTH00087  135 PLALTLRLTVNLMVGHLISSLLN-----------FLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 92-221 1.13e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 48.35  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  92 TPTTQLSMNLGMAIPLWAATVIMGFRHKMKSSLAHFLPQGTPIPLIPMLIIIETI-SLFIQPMALAVRLTANITAGHLLI 170
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236517408 171 HLIGGATMVLTSISPTVSSITFTILILltILEFAVALIQAYVFTLLVSLYL 221
Cdd:PRK13417  297 LALMGFIFQFQSWGIVPVSVIGSGLIY--VLEIFVAFLQAYIFVLLTSLFV 345
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 70-221 1.25e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 38.96  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517408  70 MLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAATVIMGFRHK-MKSSLAHFLpqgtpiPLIPMLIIIETISL 148
Cdd:PRK13420   77 FVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEgLREYLKHYL------SPSPFLLPFHLISE 150

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517408 149 FIQPMALAVRLTANITA---GHLLIHLIGGatmvltsisptvssitFTILILLTILEFAVALIQAYVFTLLVSLYL 221
Cdd:PRK13420  151 ITRTLALAVRLFGNIMSlelAALLVLLVAG----------------FLVPVPILMLHIIEALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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