|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.88e-157 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 445.06 E-value: 1.88e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330
....*....|..
gi 1236518619 321 KQTLLLPPLVIM 332
Cdd:MTH00105 321 KPMTLLPTLIIL 332
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-326 |
2.92e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 88.47 E-value: 2.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAI-IPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSII 87
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 88 NIHNNLTSFT------------IIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPS------- 148
Cdd:TIGR01770 187 DLLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfse 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 149 TNPNILLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITM----FTIL----- 219
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllrs 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 220 -NINTNTTTLALSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVY 298
Cdd:TIGR01770 347 yKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVK 426
|
330 340
....*....|....*....|....*...
gi 1236518619 299 StsltMFPSFNNTKMKWQLQPTKQTLLL 326
Cdd:TIGR01770 427 V----MYFDKPERRIPSNPQSKAQSLLL 450
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
1.44e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 84.67 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 23 SSHWLLIWIGLEMNMLAIIPILT-KKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSIINIHNNLT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 95 ----SFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLL-TWQKLAPISI--MIQIYPSTNP---NILLLMALLSILA 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirRSLLYLPSSPfiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 165 GGWGGLNQTQLRKILAYSSIAHMGWMMTIL----TFCPSLTILNLLIYLMLTITMF-----TILNINTNTTTLALSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1236518619 236 KAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
4.39e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.78 E-value: 4.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIpILT--KKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSI 86
Cdd:COG1007 107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 87 INIHNNLTSFT------------IIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNIL 154
Cdd:COG1007 186 AGIAAALAAGGanspllllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 155 LLMALLSI-------LAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSL----TILNLLIYLMLTITMFTILNI-- 221
Cdd:COG1007 266 ADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLls 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 222 --NTNTTTLA-LSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVY 298
Cdd:COG1007 346 rkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.88e-157 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 445.06 E-value: 1.88e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330
....*....|..
gi 1236518619 321 KQTLLLPPLVIM 332
Cdd:MTH00105 321 KPMTLLPTLIIL 332
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
2.98e-115 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 337.93 E-value: 2.98e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPsTNPNILLLMALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330
....*....|..
gi 1236518619 321 KQTLLLPPLVIM 332
Cdd:MTH00135 320 QLTLPLAISTTA 331
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
3.13e-103 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 307.23 E-value: 3.13e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLqPT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319
|
330
....*....|..
gi 1236518619 321 KQTLLLPPLVIM 332
Cdd:MTH00070 320 KTNNLLSLTIIL 331
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-325 |
5.91e-102 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 303.67 E-value: 5.91e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
....*
gi 1236518619 321 KQTLL 325
Cdd:MTH00112 321 KNTLT 325
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-325 |
1.27e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 246.80 E-value: 1.27e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
....*
gi 1236518619 321 KQTLL 325
Cdd:MTH00200 321 SNLLV 325
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
5-306 |
1.40e-77 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 241.76 E-value: 1.40e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 5 ILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQW 84
Cdd:MTH00041 5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 85 SIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALLSILA 164
Cdd:MTH00041 85 SINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 165 GGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMITMTI 244
Cdd:MTH00041 165 GGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLF 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518619 245 LISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFP 306
Cdd:MTH00041 245 ILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
6-315 |
1.35e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 163.52 E-value: 1.35e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 6 LMFIMLtIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWs 85
Cdd:MTH00144 7 LLFLFL-MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 86 iinihnnLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMA-LLSILA 164
Cdd:MTH00144 85 -------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 165 GGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLwNKAPMITMTI 244
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSI 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518619 245 LISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKW 315
Cdd:MTH00144 237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-299 |
8.52e-45 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 156.09 E-value: 8.52e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMY 80
Cdd:MTH00011 3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 SGQWSIInihnnlTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNILLLMALL 160
Cdd:MTH00011 83 PSLLKNI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYS 299
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
7.57e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 151.13 E-value: 7.57e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 1 MKPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMy 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 81 sgqwsIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIypsTNPNILLLMALL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 161 SILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 241 TMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLtmfpsFNNTKMKWQLQPT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM-----LNYNKNKWNLKKK 307
|
330 340
....*....|....*....|....*..
gi 1236518619 321 KQTLLLPPLVIMSTLTLPLSPSLLIMN 347
Cdd:MTH00160 308 KNKFSLILNFLSFISLFGLILSSLLFL 334
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-332 |
4.34e-35 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 130.56 E-value: 4.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 7 MFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFtiiinamySGQWSI 86
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM--------GGSLSF 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 87 INIHNNLTS-FTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPIsiMIQIYPSTNPNILLLMALLSILAG 165
Cdd:MTH00197 73 SNLYLSLLSvVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLIG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 166 GWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITMFTILNINTNTTTLALSNLWNKAPMITMTIL 245
Cdd:MTH00197 151 GIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 246 ISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVYSTSLTMFPSFNNTKMKWQLQPTKQTLL 325
Cdd:MTH00197 231 LSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILL 310
|
....*..
gi 1236518619 326 LPPLVIM 332
Cdd:MTH00197 311 MMMLPLL 317
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
9-298 |
1.09e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 103.94 E-value: 1.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAI-IPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSII 87
Cdd:MTH00199 102 LILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQ 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 88 NIHNNLTS----FTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNpnILLLMALLSIL 163
Cdd:MTH00199 182 GINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSII 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 164 AGGWGGLNQTQLRKILAYSSIAHMG---WMMTILTFCP-SLTILNLLIYLMLTITMFTILNINTNTTTL--ALSNLWNKA 237
Cdd:MTH00199 260 YGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLivEVSGLSRKN 339
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518619 238 PMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVY 298
Cdd:MTH00199 340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-297 |
4.72e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 95.48 E-value: 4.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 13 IFIGTMLTMISSHWLLIWIGLEMNMLAI-IPILTKKSNPRSTEAATKYFLTQATASMLLMFTI-------------IINA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 79 MYSGQWSIINIHNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPstNPNILLLMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 159 LLSILAGGWGGLNQTQLRKILAYSSIAHMG---WMMTILTF-CPSLTILNLLIYLMLTITMFTI-LNINTNTTTLA-LSN 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518619 233 LWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLV 297
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-326 |
2.92e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 88.47 E-value: 2.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAI-IPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSII 87
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 88 NIHNNLTSFT------------IIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPS------- 148
Cdd:TIGR01770 187 DLLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfse 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 149 TNPNILLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYLMLTITM----FTIL----- 219
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllrs 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 220 -NINTNTTTLALSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVY 298
Cdd:TIGR01770 347 yKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVK 426
|
330 340
....*....|....*....|....*...
gi 1236518619 299 StsltMFPSFNNTKMKWQLQPTKQTLLL 326
Cdd:TIGR01770 427 V----MYFDKPERRIPSNPQSKAQSLLL 450
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
1.44e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 84.67 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 23 SSHWLLIWIGLEMNMLAIIPILT-KKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSIINIHNNLT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 95 ----SFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLL-TWQKLAPISI--MIQIYPSTNP---NILLLMALLSILA 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirRSLLYLPSSPfiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 165 GGWGGLNQTQLRKILAYSSIAHMGWMMTIL----TFCPSLTILNLLIYLMLTITMF-----TILNINTNTTTLALSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1236518619 236 KAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
4.39e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.78 E-value: 4.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIpILT--KKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSI 86
Cdd:COG1007 107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 87 INIHNNLTSFT------------IIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQIYPSTNPNIL 154
Cdd:COG1007 186 AGIAAALAAGGanspllllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 155 LLMALLSI-------LAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSL----TILNLLIYLMLTITMFTILNI-- 221
Cdd:COG1007 266 ADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLls 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 222 --NTNTTTLA-LSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRLVY 298
Cdd:COG1007 346 rkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-297 |
1.31e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 74.47 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 8 FIMLTIF-IGTMLTMISS-HWLLIWIGLEMNMLAI-IPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQW 84
Cdd:PRK05777 105 FYLLVLFaLLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 85 SIINIHNNLTSFT------------IIIALTMKLGMTPFHFWVPEVTQG----ITL----------MAGMLLLTWQKLAP 138
Cdd:PRK05777 185 SFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGaptpVTAflatapkiaaFAVLLRLLVVAFGG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 139 ISIMIQIYpstnpniLLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTIL----TFCPSLTILNLLIYLMLTIT 214
Cdd:PRK05777 265 LSEDWQQV-------LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLG 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 215 MFTILNI----NTNTTTLA-LSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLN 289
Cdd:PRK05777 338 AFGVISLlrrkGGEAESISdFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIG 417
|
....*...
gi 1236518619 290 LYFYMRLV 297
Cdd:PRK05777 418 AFYYLRVI 425
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
7-301 |
3.10e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 57.85 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 7 MFIMLTIFiGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWSI 86
Cdd:COG0651 111 PLFLLLLA-GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNM 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 87 INIHNNLTSFT----------IIIALTMKLGMTPFHFWVPEV-----TQGITLMAGMLLltwqKLAPISIM---IQIYPS 148
Cdd:COG0651 190 ADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDAypaapSPVSALLSGLLT----KVGVYAILrvlTLLFGA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 149 TNPNILLLMALLS----ILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILNLLIYL----MLTITMFTI-- 218
Cdd:COG0651 266 DPALFLGTLLLVLglltMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAag 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 219 -LNINTNTTTLA-LSNLWNKAPMITMTILISLLSLGGLPPLTGFLPKWAIIQELTKNNNIIMATTMAMAALLNLYFYMRL 296
Cdd:COG0651 346 aIERATGTRDLDkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
....*
gi 1236518619 297 VYSTS 301
Cdd:COG0651 426 FGRAQ 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-219 |
3.36e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 57.95 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRST---------EAATKYFLTQATASMLLMFTI----- 74
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfg 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 75 ------IINAMYSGQWSIINI---HNNLTSFTIIIALTMKLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLAPISIMIQI 145
Cdd:MTH00198 273 ftgnegMLGTILSATLETTNIelrQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518619 146 YPSTNpnILLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCPSLTILN----LLIYLMLTITMFTIL 219
Cdd:MTH00198 353 VITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVI 428
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-265 |
3.87e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 57.75 E-value: 3.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 9 IMLTIFIGTMLTMISSHWLLIWIGLEMnmLAIIPILTK---KSNPRSTEAATKYFLTQATASMLLMFTI-IINAMYSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 85 SIINIHNNLT---SFTIIIALTM-------KLGMTPFHFWVPEVTQGITLMAGMLLLTWQKLA----PISIMIQIYPSTN 150
Cdd:PRK02504 193 QLSAIALALItspSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 151 PN---ILLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILTFCP----SLTILNLLIYLMLTITMFT---ILN 220
Cdd:PRK02504 273 EQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAcviLFS 352
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1236518619 221 INTNTTTLA-LSNLWNKAPMITMTILISLLSLGGLPPLTGFLPK----WA 265
Cdd:PRK02504 353 LRTGTDQISdYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKiylfWA 402
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-332 |
5.15e-07 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 46.10 E-value: 5.15e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1236518619 291 YFYMRLVYSTSLTMFPSFNNTKMKWQLQPTKQTLLLPPLVIM 332
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTL 42
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-191 |
2.62e-06 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 48.92 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 55 AATKYFLTQATASMLLMFTIIINAMYSGQWS--IINIHNNLTSFT--------IIIALTMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 120 QGITLMAGMLL----------------LTWQKLAP-------ISImiqIYpstnpnilllmallsilaGGWGGLNQTQLR 176
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPllaalgvIGI---IY------------------GALVALAQTDLK 300
|
170
....*....|....*
gi 1236518619 177 KILAYSSIAHMGWMM 191
Cdd:COG1008 301 RLIAYSSVSHMGFVL 315
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
6-191 |
6.03e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 47.63 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 6 LMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYSGQWS 85
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTF 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 86 IINIHNNLTS---------FTIIIALTMKLGMTPFHFWVPEV-----TQGITLMAGMLLltwqKLAPISIM---IQIYPS 148
Cdd:TIGR01972 188 DLLELLNLPLpfgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPD 263
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1236518619 149 TNPNILLLMALLSILA---GGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:TIGR01972 264 ASLYFAPVLAALGVIAiiyGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
2-191 |
2.97e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 45.79 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 2 KPPILMFIMLTIFIGTMLTMISSHWLLIWIGLEMNMLAIIPILTKKSNPRSTEAATKYFLTQATASMLLMFTIIINAMYS 81
Cdd:PRK12561 85 KPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSG 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 82 GQWSIinihnNLTSFT---------------IIIALTMKLGMTPFHFWVPEV-----TQGITLMAGMLLltwqKL---AP 138
Cdd:PRK12561 165 DTFTF-----DLAELGaksyplalelllyagFLIAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLL----KMggyAL 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518619 139 ISIMIQIYPSTNPNILLLMALLSILAGGWGGLN---QTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561 236 IRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-191 |
8.52e-04 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 40.96 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 55 AATKYFLTQATASMLLMFTII----INAMYSGQWSIINIHNNLTS--------FTIIIALTMKLGMTPFHFWVPEV---- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPDAhvqa 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 119 -TQGITLMAGMLLltwqKLAP---ISIMIQIYPSTNPNILLLMALLSILA---GGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
54-191 |
7.90e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 38.15 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 54 EAATKYFLTQATASMLLMFTIiinAMYSGQWSIIN-------IHNNLTSFTIII------ALTMKLGMTPFHFWVP---- 116
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylavkMSENPTVVAKIAlalfiaGLAMKSGAVPVHMWLPdayp 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518619 117 EVTQGITlmaGMLLLTWQ----KLAPISIMI---QIYPSTNPNILLLMALLSILAGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:PRK08376 249 AAPSSIS---AMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGY 325
|
..
gi 1236518619 190 MM 191
Cdd:PRK08376 326 ML 327
|
|
| |
