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Conserved domains on  [gi|1236518647|ref|YP_009414313|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Phaner electromontis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 2.01e-144

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.93  E-value: 2.01e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1236518647 321 KQAMLMAPLVTLSTLSLPLSTTFSILN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 2.01e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.93  E-value: 2.01e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1236518647 321 KQAMLMAPLVTLSTLSLPLSTTFSILN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-284 1.12e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 81.98  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  23 SSHWLSIWIGLEINMLAMIPILT-NKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQWNVINTFNQLT------- 94
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  95 ----SFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLL-TWQKLAPIFI-----LIQIYSSTNLHILLLISLLSIMI 164
Cdd:pfam00361  81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 165 GGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLM----LTITMFTLLNLNT-----NTTMLTMSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLthglFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1236518647 236 KSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIV 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 6.70e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.23  E-value: 6.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  10 MMTIFSGTILTMISSHWLSIWIGLEINMLAMIpILT--NKAKPRSMEAATKYFLTQATAS-MLLM-------------LT 73
Cdd:COG1007   108 LLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSgFLLYgisllygatgslnLA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  74 IIINAINSGQWNviNTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHI 153
Cdd:COG1007   187 GIAAALAAGGAN--SPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 154 LLLISLLSIMI-------GGWGGLNQTQMRKIMAYSSIAHMGWMMSILMfcpSMTTLN-------LLIYLMLTITMFTLL 219
Cdd:COG1007   265 AADWQLLLAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 220 NLNTNTTMLTMS-----NLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYM 294
Cdd:COG1007   342 LLLSRKGGEAEEiedlaGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....
gi 1236518647 295 RLIY 298
Cdd:COG1007   422 RVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-297 8.93e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 8.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  10 MMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPR-SMEAATKYFLTQATASMLLMLTIIINAINSGQWNVIN 88
Cdd:TIGR01770 108 LLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFED 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  89 TFNQLTSFM------------FIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIY-------SST 149
Cdd:TIGR01770 188 LLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEA 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 150 NLHILLLISLLSIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLT 229
Cdd:TIGR01770 268 WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSY 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518647 230 ----------MSNLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLI 297
Cdd:TIGR01770 348 kdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 2.01e-144

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 411.93  E-value: 2.01e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1236518647 321 KQAMLMAPLVTLSTLSLPLSTTFSILN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 1.82e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 292.48  E-value: 1.82e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIySSTNLHILLLISLL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*.
gi 1236518647 321 KQAMLMAPLVTLSTLSLPLSTTFSIL 346
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.33e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 290.19  E-value: 1.33e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|..
gi 1236518647 321 KQAmLMAPLVTLSTLSLPLSTT 342
Cdd:MTH00112  321 KNT-LTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-342 2.72e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 286.82  E-value: 2.72e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYqPT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                         330       340
                  ....*....|....*....|..
gi 1236518647 321 KQAMLMAPLVTLSTLSLPLSTT 342
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPT 341
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.57e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 233.32  E-value: 2.57e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1236518647 321 KQaMLMAPLVTLSTLSLPLSTTFSIL 346
Cdd:MTH00200  321 SN-LLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-307 2.39e-73

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 230.97  E-value: 2.39e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 SGQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPT 307
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-315 2.52e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.04  E-value: 2.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   7 MLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQWNV 86
Cdd:MTH00144    7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  87 intfnqltSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLIS-LLSIMIG 165
Cdd:MTH00144   87 --------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 166 GWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLwNKSPMVTLIIL 245
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSII 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 246 ISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKW 315
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 3.92e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 154.60  E-value: 3.92e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   1 MKPITRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAIN 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  81 sgqwnvINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFIliqIYSSTNLHILLLISLL 160
Cdd:MTH00160   82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 161 SIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMV 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 241 TLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYStSLTLFPTSNNYKMKWQYQPT 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS-SLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*.
gi 1236518647 321 KQAMLMapLVTLSTLSLPLSTTFSIL 346
Cdd:MTH00160  312 SLILNF--LSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-299 1.86e-39

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 142.23  E-value: 1.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   5 TRMLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQW 84
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  85 NVIntfnqlTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLLSIMI 164
Cdd:MTH00011   87 KNI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 165 GGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMVTLII 244
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1236518647 245 LISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYS 299
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-334 1.06e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.10  E-value: 1.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   7 MLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAINsgqwnv 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------ 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  87 iNTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTnlHILLLISLLSIMIGG 166
Cdd:MTH00197   75 -LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 167 WGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLTMSNLWNKSPMVTLIILI 246
Cdd:MTH00197  152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 247 SLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYST-SLTLFPTSNNYKMKWQYQPTK-QAM 324
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSlILSNWMINFLMKINLLYSGLFiLLM 311

                         330
                  ....*....|
gi 1236518647 325 LMAPLVTLST 334
Cdd:MTH00197  312 MMLPLLMIFT 321
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-297 1.30e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 85.85  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  16 GTILTMISSHWLSIWIGLEINMLAM-IPILTNKAKPRSMEAATKYFLTQATASMLLMLTI-------------IINAINS 81
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  82 GQWNVINTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIysSTNLHILLLISLLS 161
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 162 IMIGGWGGLNQTQMRKIMAYSSIAHMG---WMMSILMFCPSMTTL-NLLIYLMLTITMFTLLNLNTNTTMLTM--SNLWN 235
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESIQASLvYLFIYIIMSICVFSIILALNVYKNLIIefSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518647 236 KSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLI 297
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-284 1.12e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 81.98  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  23 SSHWLSIWIGLEINMLAMIPILT-NKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQWNVINTFNQLT------- 94
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  95 ----SFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLL-TWQKLAPIFI-----LIQIYSSTNLHILLLISLLSIMI 164
Cdd:pfam00361  81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 165 GGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLM----LTITMFTLLNLNT-----NTTMLTMSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLthglFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1236518647 236 KSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIV 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-188 5.02e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 78.52  E-value: 5.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   7 MLTMMTIFSGTILTMiSSHWLSIWIGLEINMLAMIpILTNKAKP--RSMEAATKYFLTQATASMLLMLTII--------- 75
Cdd:MTH00199  101 ILILIVALGSLLLVS-SINWLSIYLAIELQTLTLF-ILVALKRDsaYSTEAGLKYFVLGAVSSGLFLFGCAllygltget 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  76 ----INAINSGQWNVIntfnqltsfMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNL 151
Cdd:MTH00199  179 siqgINSILTGDVGKI---------LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV 249

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1236518647 152 HILLLISLLSImiGGWGGLNQTQMRKIMAYSSIAHMG 188
Cdd:MTH00199  250 VLICAVLSIIY--GAIGALNQTKIKRLLAYSGIGHMG 284
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 6.70e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.23  E-value: 6.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  10 MMTIFSGTILTMISSHWLSIWIGLEINMLAMIpILT--NKAKPRSMEAATKYFLTQATAS-MLLM-------------LT 73
Cdd:COG1007   108 LLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSgFLLYgisllygatgslnLA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  74 IIINAINSGQWNviNTFNQLTSFMFIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHI 153
Cdd:COG1007   187 GIAAALAAGGAN--SPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 154 LLLISLLSIMI-------GGWGGLNQTQMRKIMAYSSIAHMGWMMSILMfcpSMTTLN-------LLIYLMLTITMFTLL 219
Cdd:COG1007   265 AADWQLLLAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 220 NLNTNTTMLTMS-----NLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYM 294
Cdd:COG1007   342 LLLSRKGGEAEEiedlaGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....
gi 1236518647 295 RLIY 298
Cdd:COG1007   422 RVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-297 8.93e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 8.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  10 MMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPR-SMEAATKYFLTQATASMLLMLTIIINAINSGQWNVIN 88
Cdd:TIGR01770 108 LLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFED 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  89 TFNQLTSFM------------FIIAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIY-------SST 149
Cdd:TIGR01770 188 LLLFLSNGMlnisllllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEA 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 150 NLHILLLISLLSIMIGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYLMLTITMFTLLNLNTNTTMLT 229
Cdd:TIGR01770 268 WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSY 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518647 230 ----------MSNLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLI 297
Cdd:TIGR01770 348 kdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-297 3.84e-10

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 60.99  E-value: 3.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   8 LTMMTIFsGTILTMISSHWLSIWIGLEINMLAM-IPILTNKAKPRSMEAATKYFLTQATAS-MLLM-------------L 72
Cdd:PRK05777  108 LVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASgFLLYgmsllygatgslsF 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  73 TIIINAINSGQwnvINTFNQLTSFMFIIA-FTMKLGMAPFHFWVPEVTQGIN----------------------LMTGML 129
Cdd:PRK05777  187 AGIAKALADGS---GNSLLLLFGLVFLLVgLAFKLSAVPFHMWTPDVYEGAPtpvtaflatapkiaafavllrlLVVAFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 130 LLTWQkLAPIFILIQIYSstnlhilllisllsIMIGGWGGLNQTQMRKIMAYSSIAHMGWMM-SILMFCPSMTT---LNL 205
Cdd:PRK05777  264 GLSED-WQQVLAIIAIAS--------------MLVGNLAALSQTNIKRLLAYSSIAHAGYLLvGLAAGTAEGYSavlFYL 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 206 LIYLMLTITMFTLLNLNTNTTMLTMS-----NLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILAT 280
Cdd:PRK05777  329 LAYLFMTLGAFGVISLLRRKGGEAESisdfaGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAV 408

                         330
                  ....*....|....*..
gi 1236518647 281 TMIVMALLNLYFYMRLI 297
Cdd:PRK05777  409 IGVLNSAIGAFYYLRVI 425
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.12e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 53.42  E-value: 1.12e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236518647 291 YFYMRLIYSTSLTLFPTSNNYKMKWQYQPTKQAMLMAPLVTLSTLSLPLST 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-191 4.09e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 57.95  E-value: 4.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  16 GTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSM---------EAATKYFLTQATASMLLMLTIIINAINSGQWNV 86
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGM 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  87 INTFNQLT-------------SFMFI-IAFTMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLH 152
Cdd:MTH00198  280 LGTILSATlettnielrqgslGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1236518647 153 ILLLISLLSImiGGWGGLNQTQMRKIMAYSSIAHMGWMM 191
Cdd:MTH00198  360 LSVAIISLVV--GAFGALNQTRIKRLLAYSGIGHIGFIL 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 50-191 3.38e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.62  E-value: 3.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  50 PRSMEAATKYFLTQATASMLLMLTIIINAINSGQWnvinTFN-------------QLTSF-MFIIAFTMKLGMAPFHFWV 115
Cdd:COG1008   157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGAL----TFDiaelaaaplpltaQLLLFlAFFIAFAVKVPMFPFHTWL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 116 PEV-----TQGINLMTGMLL----------------LTWQKLAPIFILIQIYSstnlhilllisllsIMIGGWGGLNQTQ 174
Cdd:COG1008   233 PDAhveapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGVIG--------------IIYGALVALAQTD 298

                         170
                  ....*....|....*..
gi 1236518647 175 MRKIMAYSSIAHMGWMM 191
Cdd:COG1008   299 LKRLIAYSSVSHMGFVL 315
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 7-191 8.97e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 8.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647   7 MLTMMTIFSGTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQWNV 86
Cdd:TIGR01972 109 YALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFD 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  87 INTFNQLTS---------FMFIIAFTMKLGMAPFHFWVPEV-----TQGINLMTGMLLltwqKLAP---IFILIQIYSST 149
Cdd:TIGR01972 189 LLELLNLPLpfgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFNLPLFPDA 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1236518647 150 NLHILLLISLLSIMI---GGWGGLNQTQMRKIMAYSSIAHMGWMM 191
Cdd:TIGR01972 265 SLYFAPVLAALGVIAiiyGALIALAQTDIKRLIAYSSISHMGFVL 309
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 16-301 6.29e-06

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 47.45  E-value: 6.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  16 GTILTMISSHWLSIWIGLEINMLAMIPILTNKAKPRSMEAATKYFLTQATASMLLMLTIIINAINSGQWN---------V 86
Cdd:COG0651   119 GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNmadlaarlaE 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  87 INTFNQLTSF-MFIIAFTMKLGMAPFHFWVPE--------VTQginLMTGMLLltwqKLApIFILIQIYSSTNLHILLLI 157
Cdd:COG0651   199 LDPGLLLAAFaLLLVGFGIKAALFPLHFWLPDaypaapspVSA---LLSGLLT----KVG-VYAILRVLTLLFGADPALF 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 158 SLLSIM--------IGGWGGLNQTQMRKIMAYSSIAHMGWMMSILMFCPSMTTLNLLIYL----MLTITMF----TLLNL 221
Cdd:COG0651   271 LGTLLLvlglltmlVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFlaagAIERA 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 222 NTNTTMLTMSNLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTS 301
Cdd:COG0651   351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
10-297 1.66e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 43.12  E-value: 1.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  10 MMTIFSGTILTMISSHWLSIWIGLEinMLAMIPILTN---KAKPRSMEAATKYFLTQATASMLLM--------------- 71
Cdd:PRK02504  116 LLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLygssllyglsggstq 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  72 LTIIINAINSGQwnvinTFNQLTSFMFIIA-FTMKLGMAPFHFWVPEVTQG---------------------INLMTGML 129
Cdd:PRK02504  194 LSAIALALITSP-----SLGLALALVFVIAgIAFKISAVPFHQWTPDVYEGsptpvvaflsvgskaagfalaIRLLVTAF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 130 LLTWQKLAPIFILIQIYSSTnlhilllisllsimIGGWGGLNQTQMRKIMAYSSIAHMGWMMsILMFCP-----SMTTLN 204
Cdd:PRK02504  269 PSFDEQWKLLFTALAILSMV--------------LGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFY 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 205 LLIYLMLTITMFTLLNLNTNTT----MLTMSNLWNKSPMVTLIILISLLSLGGLPPLMGFLPKWAIVYELTKNNNIILAT 280
Cdd:PRK02504  334 LLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVL 413

                         330
                  ....*....|....*..
gi 1236518647 281 TMIVMALLNLYFYMRLI 297
Cdd:PRK02504  414 VGLVTSVISIYYYIRVI 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-191 2.33e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  55 AATKYFLTQATASMLLMLTIIINAINSGQWnvinTFN-------------QLTSFM-FIIAFTMKLGMAPFHFWVPEVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTF----TFDlaelgaksyplalELLLYAgFLIAFGVKLPIFPLHTWLPDAHG 213

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518647 121 GINLMTGMLL----LTWQKLAPIFILIQIYSSTNLHILLLISLLSIMIGGWGGLN---QTQMRKIMAYSSIAHMGWMM 191
Cdd:PRK12561  214 EASAPVSMILagvlLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 4.48e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.73  E-value: 4.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  50 PRSMEAATKYFLTQATASMLLMLTIIinAINSGQWNVINTFN-------QLTSFM-------FIIAFTMKLGMAPFHFWV 115
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAII--YLVVVYYNATGTFDiadllnlPLPPGVqywlflaFFIAFAVKMPMFPLHTWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 116 PEV-----TQGINLMTGMLLltwqKLA---------PIFILIQIYSSTnlhILLLISLLSIMIGGWGGLNQTQMRKIMAY 181
Cdd:PRK05846  235 PDAhvqapTAGSVLLAGILL----KMGaygllrfslPLFPDASHEFAP---IIITLGVIAIIYGALVALAQTDIKKLIAY 307

                         170
                  ....*....|
gi 1236518647 182 SSIAHMGWMM 191
Cdd:PRK05846  308 SSISHMGFVT 317
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 5.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 41.62  E-value: 5.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  33 LEINMLAMIPILT-NKAKPRSMEAATKYFLTQATASMLLMLTIiinAINSGQWNVIN-------------TFNQLTSFMF 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylavkmsenptVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  99 IIAFTMKLGMAPFHFWVP----EVTQGINLMtgMLLLTWQKLAPIF-ILIQIYSSTNLHIL-----LLISLLSIMIGGWG 168
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPdaypAAPSSISAM--LLVIKQAGLYALArVLFSIYGPAINLATvgwviIILGCLTMFVGVAM 304

                         170       180
                  ....*....|....*....|...
gi 1236518647 169 GLNQTQMRKIMAYSSIAHMGWMM 191
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYML 327
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 96-315 4.13e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 38.31  E-value: 4.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647  96 FMFIIAFtMKLGMAPFHFWVPEVTQGINLMTGMLLLTWQKLAPIFILIQIYSSTNLHILLLISLLSIMIggwgGLNQTQM 175
Cdd:MTH00091   62 FQFLILM-MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSY 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 176 RKIMAYSSIAHMGWMMSILMFCPSMTtlnLLIYLMLTITMFTLLnlntnttmltmsNLWNKSPMVTLIILISLLSLGGLP 255
Cdd:MTH00091  137 KNLLILSSTESFNWLILSFFFSFFNV---FFLFFYYFLLMLFLI------------PKFNNVNKLNFVSWETLLVFMNLP 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518647 256 PLMGFLPKWAIVYELTKNNNIILATTMIVMALLNLYFYMRLIYSTSLTLFPTSNNYKMKW 315
Cdd:MTH00091  202 FSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFF 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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