|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-349 |
1.82e-155 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 440.05 E-value: 1.82e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNINsnNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIA 160
Cdd:MTH00105 81 SGQWTITKLT--NPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105 159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQ 320
Cdd:MTH00105 239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318
|
330 340
....*....|....*....|....*....
gi 1237408484 321 LKKRYLLLSPLITLSTLSLPLSPMFSILN 349
Cdd:MTH00105 319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
2.07e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 325.61 E-value: 2.07e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNINsnNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSiNLNILMLIA 160
Cdd:MTH00135 81 TGQWDIQQMS--HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00135 158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQ 320
Cdd:MTH00135 238 ALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317
|
330 340
....*....|....*....|...
gi 1237408484 321 LKKRYLLLSPLITLSTLSLPLSP 343
Cdd:MTH00135 318 STQLTLPLAISTTATLMLLPLTP 340
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
1.14e-106 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 316.09 E-value: 1.14e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNINSNnmLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIA 160
Cdd:MTH00070 81 TGEWTIMNMQTP--LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00070 159 LLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQ 320
Cdd:MTH00070 239 TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318
|
330 340
....*....|....*....|...
gi 1237408484 321 LKKrYLLLSPLITLSTLSLPLSP 343
Cdd:MTH00070 319 NKT-NNLLSLTIILSLMLLPITP 340
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-344 |
4.58e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 311.76 E-value: 4.58e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNINsnNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIA 160
Cdd:MTH00112 81 TGQWDITQLT--NPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00112 159 ILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQ 320
Cdd:MTH00112 239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318
|
330 340
....*....|....*....|....
gi 1237408484 321 lKKRYLLLSPLITLSTLSLPLSPM 344
Cdd:MTH00112 319 -PKKNTLTATLTTLSTLLLPLSPM 341
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-348 |
1.21e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 234.09 E-value: 1.21e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNINSNNMLTSFTMiiALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIA 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILL--ALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00200 159 LLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQ 320
Cdd:MTH00200 239 ILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK 318
|
330 340
....*....|....*....|....*...
gi 1237408484 321 LKKrYLLLSPLITLSTLSLPLSPMFSIL 348
Cdd:MTH00200 319 SNS-NLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
5-348 |
2.67e-72 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 228.28 E-value: 2.67e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 5 ILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQW 84
Cdd:MTH00041 5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 85 TItnINSNNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIALLSV 164
Cdd:MTH00041 85 SI--NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 165 LAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSPAITT 244
Cdd:MTH00041 163 LVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAF 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 245 MILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQLKKR 324
Cdd:MTH00041 243 LFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
|
330 340
....*....|....*....|....*.
gi 1237408484 325 YL--LLSPLITLSTLSLPLSPMFSIL 348
Cdd:MTH00041 323 VYgvILSILSSISILGLLLIPLFLSF 348
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-348 |
1.17e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 163.84 E-value: 1.17e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMy 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 sgqwtitNINSNNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsiNLNILMLIA 160
Cdd:MTH00160 81 -------NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIII 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00160 151 ILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSK 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFptpNNIKMKWQFQ 320
Cdd:MTH00160 231 KIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKK 307
|
330 340
....*....|....*....|....*...
gi 1237408484 321 LKKRYLLLSPLITLSTLSLPLSPMFSIL 348
Cdd:MTH00160 308 KNKFSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
1.93e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 152.73 E-value: 1.93e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWtitninsnnmLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINL-NILMLI 159
Cdd:MTH00144 81 SFSW----------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 160 ALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLwSKS 239
Cdd:MTH00144 151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPS 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1237408484 240 PAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKW 317
Cdd:MTH00144 230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-301 |
1.55e-41 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 147.62 E-value: 1.55e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 1 MKPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:MTH00011 3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITninsnnmlTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIA 160
Cdd:MTH00011 83 PSLLKNI--------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00011 155 AMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQ 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1237408484 241 AITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYS 301
Cdd:MTH00011 235 TTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-331 |
1.05e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 126.71 E-value: 1.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 7 MIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFtivfnamysGQWTI 86
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM---------GGSLS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 87 TNINSNNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIsiMIQMFPSINLNILMLIALLSVLA 166
Cdd:MTH00197 72 FSNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTTLTLSNLWSKSPAITTMI 246
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 247 LISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTSLTLFPTPNNIKMKWQFQLKKRYL 326
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFIL 309
|
....*
gi 1237408484 327 LLSPL 331
Cdd:MTH00197 310 LMMML 314
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
4-345 |
2.60e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 103.17 E-value: 2.60e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 4 PILMIIMTtifMGTMLTMVSSHWLLIWIGLEINMLAI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSG 82
Cdd:MTH00199 100 PILILIVA---LGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 83 QWTITNINSNNM--LTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINlnILMLIA 160
Cdd:MTH00199 177 ETSIQGINSILTgdVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICA 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFCPSMTTL-NLFIYLMLTITMFMMLNMNMNTTTLT--LSN 234
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESIQASLiYMIIYVIMSICSFSIILSLKLTKGLIveVSG 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 235 LWSKSPAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIystSLTLFPTPNNIk 314
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQADYSI- 410
|
330 340 350
....*....|....*....|....*....|....*..
gi 1237408484 315 MKWQFQLKKR-YLLLSPLITLS-----TLSLPLSPMF 345
Cdd:MTH00199 411 LIWQKVLKKEeRLDLSKSILIGvtffiILFLMISPNF 447
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-213 |
7.59e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.84 E-value: 7.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 23 SSHWLLIWIGLEINMLAIIPILTKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQWTITNI---------NSN 92
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 93 NMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----LNILMLIALLSVLA 166
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1237408484 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLML 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLT 207
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-300 |
7.01e-20 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 90.18 E-value: 7.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 4 PILMIIMTTifmGTMLTMVSSHWLLIWIGLEIN---MLAIIPILTKNPkpRSTEAATKYFLTQATASMLLMFTIVFNAMY 80
Cdd:COG1007 105 YALLLFATL---GMMLMASANDLLTLFLGLELLslsLYVLVAFRRDDR--RSSEAALKYFLLGALSSGFLLYGISLLYGA 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 81 SGQWTITNIN---SNNMLTSFTMIIALTM-------KLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQ 146
Cdd:COG1007 180 TGSLNLAGIAaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVE 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 147 MFPSIN---LNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLML---------T 214
Cdd:COG1007 260 AFPGLAadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmnlgafA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 215 ITMFMMLNMNMNTTTLTLSNLWSKSPAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYF 294
Cdd:COG1007 340 VILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
....*.
gi 1237408484 295 YMRLIY 300
Cdd:COG1007 420 YLRVVK 425
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-299 |
8.41e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 89.32 E-value: 8.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 13 IFMGTMLTMVSSHWLLIWIGLEINMLAI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQWTITNIN- 90
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 91 SNNMLTSFT----------MIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPsiNLNILMLIA 160
Cdd:MTH00196 82 VLNSGQSFSsvsvpigyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFCPSMTTL-NLFIYLMLTITMFMMLNMNMNTTTLTL--SN 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESIQASLvYLFIYIIMSICVFSIILALNVYKNLIIefSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1237408484 235 LWSKSPAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLI 299
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-299 |
4.20e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 88.08 E-value: 4.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 8 IIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSG---- 82
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGslnf 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 83 ------QWTITNINSNNMLTSFTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 edlllfLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 152 --NLNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLMLTITMFMMLNMNMNTTT 229
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 230 LT----------LSNLWSKSPAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLI 299
Cdd:TIGR01770 346 SYkdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
4-197 |
2.89e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 79.48 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 4 PILMIIMTtifMGTMLTMVSSHWLLIWIGLEINMLAI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSG 82
Cdd:PRK05777 106 YLLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 83 QWTITNI-------NSNNMLTSFT---MIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMF---- 148
Cdd:PRK05777 183 SLSFAGIakaladgSGNSLLLLFGlvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLvvaf 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1237408484 149 ---PSINLNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILM 197
Cdd:PRK05777 263 gglSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLA 314
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-193 |
3.93e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 67.19 E-value: 3.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 15 MGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRST---------EAATKYFLTQATASMLLMFTIVF--------- 76
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 77 --NAMYSGQWTITNINSNNMLTSFTMI-IALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsINL 153
Cdd:MTH00198 279 mlGTILSATLETTNIELRQGSLGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITS 356
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1237408484 154 NILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-303 |
1.20e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 65.17 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 15 MGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQWTIT------- 87
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAdlaarla 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 88 NINSNNMLTSFTMI-IALTMKLGMTPFHFWVPEV----TQGVS-LMTGMLLltwqKLAPISIM---IQMFPSINLN---- 154
Cdd:COG0651 198 ELDPGLLLAAFALLlVGFGIKAALFPLHFWLPDAypaaPSPVSaLLSGLLT----KVGVYAILrvlTLLFGADPALflgt 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 155 ILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWM-MAILMFCPSMTTLNLFIYLMLTITMF-------MMLNMNMN 226
Cdd:COG0651 274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTPLGLAGALFHLLNHALAKAllflaagAIERATGT 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1237408484 227 TTTLTLSNLWSKSPAITTMILISLLSLGGLPPLTGFLPKWVIIQELTKNNNTIMATMMAIMALLNLYFYMRLIYSTS 303
Cdd:COG0651 354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-194 |
2.62e-10 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 61.25 E-value: 2.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 55 AATKYFLTQATASMLLMFTIVFNAMYSGQWT--ITNINSNNMLTSFTMI------IALTMKLGMTPFHFWVPEV-----T 121
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdIAELAAAPLPLTAQLLlflaffIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1237408484 122 QGVSLMTGMLLltwqKLAP---ISIMIQMFP---SINLNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMA 194
Cdd:COG1008 242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-193 |
1.13e-09 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 59.27 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 55 AATKYFLTQATASMLLMFTIVFNAMYSGQWT--ITNINSNNMLTSFTM------IIALTMKLGMTPFHFWVP----EVTQ 122
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTFTfdLAELGAKSYPLALELllyagfLIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1237408484 123 GVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
293-343 |
3.27e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 52.26 E-value: 3.27e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1237408484 293 YFYMRLIYSTSLTLFPTPNNIKMKWQFQLKKRYLLLSPLITLSTLSLPLSP 343
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-193 |
2.85e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 54.95 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 49 KPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQ-WTITNINSNNMLTSFTMI------IALTMKLGMTPFHFWVPEV- 120
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 121 ----TQGVSLMTGMLLltwqKLAPISIM---IQMFPS---INLNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMG 190
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPDaslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMG 306
|
...
gi 1237408484 191 WMM 193
Cdd:TIGR01972 307 FVL 309
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-193 |
1.82e-07 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 52.51 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 55 AATKYFLTQATASMLLMFTI----VFNAMYSGQWTITNINSNNMLTS------FTMIIALTMKLGMTPFHFWVPEV---- 120
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIiylvVVYYNATGTFDIADLLNLPLPPGvqywlfLAFFIAFAVKMPMFPLHTWLPDAhvqa 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 121 -TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINLNILMLIALLSVLA---GGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
7-265 |
6.62e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 50.82 E-value: 6.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 7 MIIMTTIFMGTMLTMVSSHWLLIWIGLEinMLAIIP-ILTKNPK--PRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQ 83
Cdd:PRK02504 113 AAILLTATLGGMFLSGATELVMIFISLE--TLSIASyLLTGYMKrdPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 84 WTITNINSNNMLTSFTMIIALTM---------KLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLA----PISIMIQMFPS 150
Cdd:PRK02504 191 STQLSAIALALITSPSLGLALALvfviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 151 INLN---ILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMaILMFCP-----SMTTLNLFIYLMLTITMFMMLN 222
Cdd:PRK02504 271 FDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVI 349
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1237408484 223 MNMNTT----TLTLSNLWSKSPAITTMILISLLSLGGLPPLTGFLPK 265
Cdd:PRK02504 350 LFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-193 |
7.36e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 47.40 E-value: 7.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 33 LEINMLAIIPILT-KNPKPRSTEAATKYFLTQATASMLLMFTIvfnAMYSGQWTITNINSNNMLTSFTM----------- 100
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPtvvakialalf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 101 IIALTMKLGMTPFHFWVPEV-TQGVSLMTGMLLLTWQK--LAPISIMIQMF-PSINLN----ILMLIALLSVLAGGWGGL 172
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQAglYALARVLFSIYgPAINLAtvgwVIIILGCLTMFVGVAMAV 306
|
170 180
....*....|....*....|.
gi 1237408484 173 NQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYML 327
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-193 |
7.71e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 47.57 E-value: 7.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 33 LEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQWTITNIN-----SNNMLTSFT-MIIALTM 106
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgalaeNPTVVTAFGfVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 107 KLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP------SINLNILMLIALLSVLAGGWGGLNQTQ 176
Cdd:PRK08375 215 KAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfaLGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170
....*....|....*..
gi 1237408484 177 LRKILAYSSIAHMGWMM 193
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIL 311
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
12-196 |
1.48e-05 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 46.68 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 12 TIFMGTMLTMV-SSHWLLIWIGLEINMLA---IIPILTKNPKPRSteAATKYFLTQATASMLLMFTIVFNAMYSGQWTIT 87
Cdd:COG1009 118 LLFMAAMLGLVlSDNLLLLFVFWELVGLCsylLIGFWYEKPSARR--AARKAFLVTRVGDLGLLLGILLLGAIAGTLNFS 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 88 NINSN--NMLTSFTMIIALTM-------KLGMTPFHFWVPE-----------------VTQGVSLMTgmllltwqKLAPI 141
Cdd:COG1009 196 ELLAAapTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPL 267
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1237408484 142 SIMIQMFpsinLNILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAIL 196
Cdd:COG1009 268 FALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
100-193 |
8.83e-05 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 44.31 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 100 MIIALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNI---LMLIALLSVLAGGWGGL 172
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLapwLATWAVVSVLYGASCAI 290
|
90 100
....*....|....*....|.
gi 1237408484 173 NQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK06473 291 AQKDMKKMVAYSSIGHMGYIL 311
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
68-213 |
2.15e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 43.12 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 68 MLL-MFTIVFNAMYSGQWTITNINSNNMLTSFTMI---IALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLA 139
Cdd:MTH00217 176 MLLgIFTLYSYAGTTDYQALCCLKIEKELQYFIFLgffLSLAIKIPKIPFHIWLPqahvEAPVAGSVILAGVLLKLGGYG 255
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1237408484 140 PISIMIQMFPSINLNILMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGwMMAILMFCPSMTTLNLFIYLML 213
Cdd:MTH00217 256 FIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLTtcrQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLML 331
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
2-193 |
3.51e-04 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 42.39 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 2 KPPILMIIMTTIFMGTMLTMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMYS 81
Cdd:PRK02546 113 KPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 82 GQWT--ITNINSNNMLTSFTM------IIALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK02546 193 DTPTfdMTALAAKDFGLGFQLlcyaglLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMLP 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1237408484 150 SINLNILMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK02546 273 DAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMGFVL 319
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
10-192 |
4.47e-04 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 41.84 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 10 MTTIFMGTML-TMVSSHWLLIWIGLEINMLAIIPILTKNPKPRSTEAATKYFL------TQATASMLLMFTIVFNAMYSG 82
Cdd:PRK06458 113 MYQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 83 QWTI--TNINS-----NNMLTSFTMIIALT---MKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK06458 193 EMAIlwTELLKhasllDPTLMKLAFVFLLIgfgTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRYYILID 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1237408484 149 PSINL----NILMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWM 192
Cdd:PRK06458 273 AAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
100-193 |
6.34e-04 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 41.62 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 100 MIIALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP---SINLNILMLIALLSVLAGGWGGL 172
Cdd:PRK07363 211 LLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFPqtwSLVAPGLAIIGTISVIYGALSAI 290
|
90 100
....*....|....*....|.
gi 1237408484 173 NQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK07363 291 AQKDIKRMVAYSSIGHMGYIL 311
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
102-213 |
8.49e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 41.20 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 102 IALTMKLGMTPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINLNILMLIALLSVLAGGWGGL- 172
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGygfLRFSWPLFPAASEYFAPLIVMLSVIAVIYGSLt 292
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1237408484 173 --NQTQLRKILAYSSIAHMGwMMAILMFCPSMTTLNLFIYLML 213
Cdd:MTH00204 293 tcRQVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLML 334
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
100-213 |
5.48e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 38.36 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 100 MIIALTMKLGMTPFHFWVPEV-----TQGVSLMTGMLL-LTWQKLAPISIMIQMFPSINLN-ILMLIALLSVLAGGWGGL 172
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLkLGGYGLVRLSWPILPLGAQNLApAVIAMGIVGIVYGSFATC 315
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1237408484 173 NQTQLRKILAYSSIAHMGwMMAILMFCPSMTTLNLFIYLML 213
Cdd:MTH00226 316 RQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIML 355
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
98-213 |
8.53e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 37.54 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 98 FTMIIALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINLNILMLIALLSVLAggwgGLNQTQL 177
Cdd:MTH00091 61 YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSY 136
|
90 100 110
....*....|....*....|....*....|....*.
gi 1237408484 178 RKILAYSSIAHMGWMMAILMFCPSMTTLNLFIYLML 213
Cdd:MTH00091 137 KNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLL 172
|
|
| PRK08168 |
PRK08168 |
NADH-quinone oxidoreductase subunit L; |
19-193 |
9.15e-03 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 37.76 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 19 LTMVSSHWLLIWIGLEINMLAIIPILTKNP-KPRSTEAATKYFLTQATASMLLMFTIVFNAMYSGQWTIT----NINSNN 93
Cdd:PRK08168 115 LLVLSDHLLVLIAAWAAISLALHRLLCFYPdRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSalwaHLAAQG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237408484 94 MLTSFT-----MIIALTMKLGMTPFHFWVPEVTQ-----------GVSLMTGMLLLtwqKLAPisiMIQMFPSINLnILM 157
Cdd:PRK08168 195 ASPSLQaaallLVLAVILKTAQLPVHGWLIQVMEaptpvsallhaGVVNLGGFVLI---RFAP---LLEQAPPARW-LLV 267
|
170 180 190
....*....|....*....|....*....|....*.
gi 1237408484 158 LIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08168 268 LVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFML 303
|
|
|