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Conserved domains on  [gi|1299050368|ref|YP_009445852|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Sarcophaga formosensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 4-308 8.07e-152

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 427.65  E-value: 8.07e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00193    2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00193   82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00193  162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1299050368 244 VMFLGSDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:MTH00193  242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 4-308 8.07e-152

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 427.65  E-value: 8.07e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00193    2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00193   82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00193  162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1299050368 244 VMFLGSDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:MTH00193  242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
11-300 1.54e-98

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 292.07  E-value: 1.54e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLVW 90
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  91 MCMPL--FVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGYNMLM 168
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 169 FYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCVMFLG 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1299050368 249 ------SDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLF 300
Cdd:pfam00146 243 gwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-308 9.97e-94

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 280.86  E-value: 9.97e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:COG1005     9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLF--VKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLI 161
Cdd:COG1005    89 IPALLAFAVIPFGpgLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 162 GGYNMLMFYKYQ-LFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSM 240
Cdd:COG1005   169 GSLNLSEIVEAQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSA 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 241 LFCVMFLG-----------SDVFSLL-FYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:COG1005   249 LATTLFLGgwlgpfpilplGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLLF 328
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
11-308 4.40e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 156.02  E-value: 4.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLVW 90
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLML 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  91 MCMPL----------FVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFL 160
Cdd:NF040610   97 VAIPFgaviingveyPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIM 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 161 IGGYNMLMFYKYQLFIWFLFiMFPMALVWFSISL-AETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMS 239
Cdd:NF040610  177 AGSLNIVEIVEAQSPIWFAF-LQPIGFIVFFIALmADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGS 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 240 MLFCVMFLGS-------------DVFS--LLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGF 304
Cdd:NF040610  256 FLVVLLFLGGwnlpgfvtdipvlGIILptLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIAL 335


                  ....
gi 1299050368 305 KVFL 308
Cdd:NF040610  336 GLYL 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 4-308 8.07e-152

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 427.65  E-value: 8.07e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00193    2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00193   82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00193  162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1299050368 244 VMFLGSDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:MTH00193  242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 4-305 8.05e-131

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 374.37  E-value: 8.05e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1299050368 244 VMFLGS--DVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFK 305
Cdd:MTH00225  241 ILFFGGffVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIIL 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 4-304 1.54e-126

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 363.42  E-value: 1.54e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1299050368 244 VMFLGSDVF-----SLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGF 304
Cdd:MTH00143  241 VLFFGGSSVlfllgGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-302 2.59e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 348.42  E-value: 2.59e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   1 MENLLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPI 80
Cdd:MTH00111    2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  81 FSLFLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFL 160
Cdd:MTH00111   82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 161 IGGYNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSM 240
Cdd:MTH00111  162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1299050368 241 LFCVMFL-------GSDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFV 302
Cdd:MTH00111  242 LTTILFLnpstlnlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHT 310
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-309 1.22e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 338.90  E-value: 1.22e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   1 MENLLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPI 80
Cdd:MTH00071    2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  81 FSLFLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFL 160
Cdd:MTH00071   82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 161 IGGYNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSM 240
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1299050368 241 LFCVMFLGS-------DVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFLI 309
Cdd:MTH00071  242 LSTILFLGStynhlqpELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTL 317
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 4-299 7.38e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 329.26  E-value: 7.38e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00134    6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00134   86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00134  166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1299050368 244 VMFLGSDVFSLL-------FYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLL 299
Cdd:MTH00134  246 ILFLGASHIPTLpelttinLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVI 308
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 5-308 2.72e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 327.74  E-value: 2.72e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   5 LFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLF 84
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  85 LSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGY 164
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 165 NMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCV 244
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1299050368 245 MFLGS-------DVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:MTH00104  241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMT 311
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 4-304 3.23e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 327.25  E-value: 3.23e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00218    2 LLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00218   82 TLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00218  162 FSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSV 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1299050368 244 VMFLGSDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGF 304
Cdd:MTH00218  242 ILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSL 302
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 4-302 8.59e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 318.61  E-value: 8.59e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:MTH00195    2 MISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGG 163
Cdd:MTH00195   82 ALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 164 YNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFC 243
Cdd:MTH00195  162 FDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTT 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1299050368 244 VMFLGSDVfSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFV 302
Cdd:MTH00195  242 ILFLGGGG-TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLA 299
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-302 1.47e-106

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 313.45  E-value: 1.47e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   1 MENLLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPI 80
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  81 FSLFLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFL 160
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 161 IGGYNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSM 240
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 241 LFCVMFLG-----SDVFSL---LFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFV 302
Cdd:MTH00040  241 LSVILFLGggspfNEIFPIniiIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYL 310
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 3-304 1.66e-101

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 300.16  E-value: 1.66e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   3 NLLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFS 82
Cdd:MTH00010    2 NISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  83 LFLSLLVWMCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIG 162
Cdd:MTH00010   82 LILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 163 GYNMLMFYKYQLFiWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLF 242
Cdd:MTH00010  162 TFSFSKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1299050368 243 CVMFLGSD----VFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGF 304
Cdd:MTH00010  241 SVFFTSFIpsifISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
NADHdh pfam00146
NADH dehydrogenase;
11-300 1.54e-98

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 292.07  E-value: 1.54e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLVW 90
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  91 MCMPL--FVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGYNMLM 168
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 169 FYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCVMFLG 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1299050368 249 ------SDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLF 300
Cdd:pfam00146 243 gwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-308 9.97e-94

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 280.86  E-value: 9.97e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:COG1005     9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLF--VKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLI 161
Cdd:COG1005    89 IPALLAFAVIPFGpgLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 162 GGYNMLMFYKYQ-LFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSM 240
Cdd:COG1005   169 GSLNLSEIVEAQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSA 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 241 LFCVMFLG-----------SDVFSLL-FYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKVFL 308
Cdd:COG1005   249 LATTLFLGgwlgpfpilplGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLLF 328
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-300 9.75e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 270.84  E-value: 9.75e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   2 ENLLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIF 81
Cdd:MTH00216    4 FIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  82 SLFLSLLVWMCMPLF--VKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVF 159
Cdd:MTH00216   84 SFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 160 LIGGYNMLMFYKYQL-FIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFM 238
Cdd:MTH00216  164 CVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILM 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 239 SMLFCVMFLGS--------DVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLF 300
Cdd:MTH00216  244 SCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIF 313
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 7-303 9.42e-89

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 268.13  E-value: 9.42e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   7 IVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLS 86
Cdd:MTH00054    5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  87 LLVWMCMPL--FVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGY 164
Cdd:MTH00054   85 FIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 165 NMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCV 244
Cdd:MTH00054  165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1299050368 245 MFLGSDVF----------SLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVG 303
Cdd:MTH00054  245 LFLGGWLVisgptsyfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSG 313
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
4-295 3.07e-87

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 263.98  E-value: 3.07e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   4 LLFIVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSL 83
Cdd:PRK06076   10 LLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  84 FLSLLVWMCMPLF--VKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLI 161
Cdd:PRK06076   90 IPAFLAWAVIPFGpeLVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLA 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 162 GGYNMLMFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSML 241
Cdd:PRK06076  170 GSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSAL 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1299050368 242 FCVMFLG----------SDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSL 295
Cdd:PRK06076  250 ITTLFLGgwlppfplggGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 12-303 2.17e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 224.51  E-value: 2.17e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  12 LLIIFV--LVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLV 89
Cdd:MTH00029   13 LLIIFVplLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  90 W--MCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGYNML 167
Cdd:MTH00029   93 WaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNIS 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 168 MFYKYQLFIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCVMFL 247
Cdd:MTH00029  173 EIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1299050368 248 G-----------------------SDVFSLLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVG 303
Cdd:MTH00029  253 GgwlspldgiptppeafsifeqiaSSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAG 331
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-306 5.70e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 205.90  E-value: 5.70e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLVW 90
Cdd:MTH00090    3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  91 MCMPLFVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFliggYNMLMFY 170
Cdd:MTH00090   83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIML----HNNSFSF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 171 KYQLFIWFLFIMFPmalvWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLFCVMFLGsd 250
Cdd:MTH00090  159 VSSFSLSLFVIYLP----FLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1299050368 251 vFSLLFyvkLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGFKV 306
Cdd:MTH00090  233 -FSFLM---LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-302 2.87e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 160.47  E-value: 2.87e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   6 FIVGSLLLIIfVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYpllsnyiSYYFSPIFSLFL 85
Cdd:MTH00058    4 LVSGLEGLLI-ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVY-------GFQSRSWFSLFG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  86 SLLVWMCMPLFVKLFSF-------NLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFV 158
Cdd:MTH00058   76 VFLLVLLVVFYCFIYGSyysgsysSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 159 FLIGGYNMLMFYkyqLFIWFLFIMFPMALVWFSIS-LAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILF 237
Cdd:MTH00058  156 LCYGSYSLVDFY---YSGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFI 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1299050368 238 MSMLFCVMFLGSDVFSLLfyvkLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFV 302
Cdd:MTH00058  233 FSWLGSVLFFGGGFVSIM----LLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
11-308 4.40e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 156.02  E-value: 4.40e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSPIFSLFLSLLVW 90
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLML 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  91 MCMPL----------FVKLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFL 160
Cdd:NF040610   97 VAIPFgaviingveyPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIM 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 161 IGGYNMLMFYKYQLFIWFLFiMFPMALVWFSISL-AETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMS 239
Cdd:NF040610  177 AGSLNIVEIVEAQSPIWFAF-LQPIGFIVFFIALmADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGS 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 240 MLFCVMFLGS-------------DVFS--LLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFVGF 304
Cdd:NF040610  256 FLVVLLFLGGwnlpgfvtdipvlGIILptLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIAL 335


                  ....
gi 1299050368 305 KVFL 308
Cdd:NF040610  336 GLYL 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 11-309 7.13e-37

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 135.08  E-value: 7.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  11 LLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTKEQTYPLLSNYISYYFSP---IFSLFLSL 87
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPsiaVISILLSY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  88 LVWMCMPLFVkLFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGYNML 167
Cdd:CHL00032  114 LVIPFGYHLV-LADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTV 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 168 MF----YKYQLFIWFLFIMfPMALVWFSI-SLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSMLF 242
Cdd:CHL00032  193 DIveaqSKYGFWGWNLWRQ-PIGFIVFLIsSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 243 CVMFLGSDVFSLLFY-------------------------VKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNF 297
Cdd:CHL00032  272 TVLYLGGWNLSIPYIfipelfeinktggvfgttigifitlAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGN 351

                         330
                  ....*....|..
gi 1299050368 298 LLFFVGFKVFLI 309
Cdd:CHL00032  352 LLLTTSFQLLSL 363
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-302 1.03e-26

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 106.42  E-value: 1.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368   7 IVGSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPnkvgiaGIPQPFCDAIKLFTKEQTYPLLSNYIsYYFSPIFSLFLS 86
Cdd:COG0650     4 ILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVALAAM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368  87 LLVWMCMPLFVK--LFSFNLGLLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFVFLIGGY 164
Cdd:COG0650    77 LLAALLVPVLTTgpPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1299050368 165 NMLMFYKYQL---FIWFLFIMFPMALVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASILFMSML 241
Cdd:COG0650   157 SLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1299050368 242 FCVMFLGSDVFS------LLFYVKLTFISFMFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNFLLFFV 302
Cdd:COG0650   237 FVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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