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Conserved domains on  [gi|1331215848|ref|YP_009454598|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Caryanda elegans]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.04e-95

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 287.10  E-value: 1.04e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   1 MNNNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  81 eylMSWESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQlSNFIFTIVILSIII 160
Cdd:MTH00160   81 ---NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYTENSWSMNAKNKSFKFTLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1331215848 321 ITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.04e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 287.10  E-value: 1.04e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   1 MNNNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  81 eylMSWESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQlSNFIFTIVILSIII 160
Cdd:MTH00160   81 ---NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYTENSWSMNAKNKSFKFTLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1331215848 321 ITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 2.94e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 2.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  24 SNSWFGVWMGLEINLLSFIPMLTNNKNSMI-NESSIKYFIVQAMASTMLLFSILLI--------------QMEYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  89 EMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVL-MTWQKIAPMMIL-------SYCIQLSNFIFTIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENI----WEIYFVIYSTLSLILVLLF-----KQMNLFLLNQIYTASN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1331215848 232 MKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 1.55e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLmmGTILSISSNSWFGVWMGLEINLLSF---IPMLTNNKNSmiNESSIKYFIVQAMASTMLLF----------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  75 ILLIQMEYLMSWESEMVPSMLISSSLLL-----KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMIL--------- 140
Cdd:COG1007   183 LNLAGIAAALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafp 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 141 SYCIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-SENIWE---IYFVIYSTlslilvllfk 216
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLF---------- 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 217 qMNL---FLLNQIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVM 280
Cdd:COG1007   333 -MNLgafAVILLLSRKGGEAEEIEdlaglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                         330
                  ....*....|..
gi 1331215848 281 LTMITLYYYLRI 292
Cdd:COG1007   412 NSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-337 5.40e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 5.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIqmeYLMSW 86
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLI---YGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  87 ESEMVPSMLISSSLLL------------------KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIA---PMMILSYCIQ 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLnisllllgivlilvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIL 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 146 ------LSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISSENIWE---IYFVIYSTLSLILVLLF 215
Cdd:TIGR01770 262 fgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 216 KQMNLFLLNQIYTASNMKTEIK------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYY 289
Cdd:TIGR01770 342 SLLRSYKDEWIEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1331215848 290 LRIsfSALILSYTENSWSMNAK-NKSFKFTLPITVMVSTTGLMLTSTLI 337
Cdd:TIGR01770 422 LRV--VKVMYFDKPERRIPSNPqSKAQSLLLSISALFILFLGLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.04e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 287.10  E-value: 1.04e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   1 MNNNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  81 eylMSWESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQlSNFIFTIVILSIII 160
Cdd:MTH00160   81 ---NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYTENSWSMNAKNKSFKFTLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1331215848 321 ITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-339 1.12e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 205.44  E-value: 1.12e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   6 TKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSIlLIQMEYLMS 85
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSS-TTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  86 WE----SEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNF--IFTIVILSII 159
Cdd:MTH00112   84 WDitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPtlLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 160 IGAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFM 239
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 240 MFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISF-SALILSYTENSWSMN-AKNKSFKF 317
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYiSTITLPPNTTNMMMKwRTKPKKNT 323

                         330       340
                  ....*....|....*....|..
gi 1331215848 318 TLPITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-318 4.49e-62

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 201.31  E-value: 4.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   3 NNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILlIQMEY 82
Cdd:MTH00041    2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGAL-IQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  83 LMSW----ESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQL--SNFIFTIVIL 156
Cdd:MTH00041   81 SGSWsingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLlnSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 157 SIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEI 236
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 237 KFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYTENSWSMNAKNKSFK 316
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                  ..
gi 1331215848 317 FT 318
Cdd:MTH00041  321 IT 322
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-339 6.17e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 195.84  E-value: 6.17e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQM---EYLM 84
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  85 SWESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILsYCIQLS---NFIFTIVILSIIIG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIL-YQISPSinpNLLLTLAILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 162 AMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMF 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 242 LSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFS-ALILSYTENSWSMNAKNKSFK--FT 318
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWQFENTKpmTL 325

                         330       340
                  ....*....|....*....|.
gi 1331215848 319 LPITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-339 1.42e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 192.44  E-value: 1.42e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  10 FLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILL---IQMEYLMSW 86
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  87 ESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQL--SNFIFTIVILSIIIGAMG 164
Cdd:MTH00070   89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlnSNLLIIMGLLSTLIGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 165 GLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTaSNMKTEIKF-MMFLS 243
Cdd:MTH00070  169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSS-SWSKNPTLTsMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFS-ALILS-YTENSWSMNAKNKSFKFTLPI 321
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAmSLTTSpNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*...
gi 1331215848 322 TVMVSTTGLMLTSTLIFM 339
Cdd:MTH00070  328 TIILSLMLLPITPTILNL 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-339 5.92e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 180.55  E-value: 5.92e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   6 TKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQMEYLMS 85
Cdd:MTH00200    5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  86 WESEMV---PSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILS--YCIQLSNFIFTIVILSIII 160
Cdd:MTH00200   85 GISEMLgplSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMM 240
Cdd:MTH00200  165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 241 FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISF-SALILSYTENSWSMNAKNKSFKFTL 319
Cdd:MTH00200  245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYlTLLTLSPNQINMMSSWRTKSNSNLL 324

                         330       340
                  ....*....|....*....|.
gi 1331215848 320 -PITVMVSTTGLMLTSTLIFM 339
Cdd:MTH00200  325 vGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-332 1.71e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 179.23  E-value: 1.71e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   9 LFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILL---IQMEYLMS 85
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  86 WESEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMmILSYCIQLSN--FIFTIVILSIIIGAM 163
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNptLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 164 GGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMFLS 243
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFS-ALILSYTENSWSMNAKNKSFKFTLPIT 322
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAmTLTISPNTLNGTTPWRLPSTQLTLPLA 326

                         330
                  ....*....|
gi 1331215848 323 VMVSTTGLML 332
Cdd:MTH00135  327 ISTTATLMLL 336
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-308 1.75e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 178.33  E-value: 1.75e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   9 LFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQMEYLMSWES 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  89 emvpSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIVILSIIIGAMGGLNQ 168
Cdd:MTH00197   82 ----VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 169 TSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMFLSLLSIG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 249 GLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYTENSWSM 308
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLM 297
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-338 1.96e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 178.54  E-value: 1.96e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   7 KLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSIlLIQMEYLMSW 86
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGS-LIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  87 ESEMVpsmlISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIVILSI---IIGAM 163
Cdd:MTH00144   85 FSMSL----LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 164 GGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMFLs 243
Cdd:MTH00144  161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL- 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALIlsytenSWSMNAKNKSFKFTLPITV 323
Cdd:MTH00144  240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSSII 313

                         330
                  ....*....|....*
gi 1331215848 324 MVSTTGLMLTSTLIF 338
Cdd:MTH00144  314 SLNLLGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-302 2.15e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 168.03  E-value: 2.15e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   6 TKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQMEYLMS 85
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  86 wesEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYC--IQLSNFIFTIVILSIIIGAM 163
Cdd:MTH00011   87 ---KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 164 GGLNQTSLRHLLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMFLS 243
Cdd:MTH00011  164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1331215848 244 LLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRISFSALILSYT 302
Cdd:MTH00011  244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPT 302
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 2.94e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 2.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  24 SNSWFGVWMGLEINLLSFIPMLTNNKNSMI-NESSIKYFIVQAMASTMLLFSILLI--------------QMEYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  89 EMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVL-MTWQKIAPMMIL-------SYCIQLSNFIFTIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENI----WEIYFVIYSTLSLILVLLF-----KQMNLFLLNQIYTASN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1331215848 232 MKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 1.55e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLmmGTILSISSNSWFGVWMGLEINLLSF---IPMLTNNKNSmiNESSIKYFIVQAMASTMLLF----------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  75 ILLIQMEYLMSWESEMVPSMLISSSLLL-----KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMIL--------- 140
Cdd:COG1007   183 LNLAGIAAALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafp 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 141 SYCIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-SENIWE---IYFVIYSTlslilvllfk 216
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLF---------- 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 217 qMNL---FLLNQIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVM 280
Cdd:COG1007   333 -MNLgafAVILLLSRKGGEAEEIEdlaglarrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                         330
                  ....*....|..
gi 1331215848 281 LTMITLYYYLRI 292
Cdd:COG1007   412 NSVISAYYYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 3.10e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 3.10e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  16 MGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMIN-ESSIKYFIVQAMASTMLLFSILLI--------------QM 80
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinlVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  81 EYLMSWESEMVPS--MLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIVILSI 158
Cdd:MTH00196   84 NSGQSFSSVSVPIgyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 159 IIGAMGGLNQTSLRHLLAYSSISHLGWMISSM----ISSENIWEIYFVIY--STLSLILVLLFKQMNLFLLNQIYTASNM 232
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYiiMSICVFSIILALNVYKNLIIEFSGLSRR 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 233 KTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRI 292
Cdd:MTH00196  244 LPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 6.45e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.94  E-value: 6.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  16 MGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMIN-ESSIKYFIVQAMASTMLLFSILLI-------QMEYLMSWE 87
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALLygltgetSIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  88 SEMVPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIVILSIIIGAMGGLN 167
Cdd:MTH00199  188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALN 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 168 QTSLRHLLAYSSISHLGWMISSM----ISSENIWEIYFVIYSTLSLILVLLFKQMNLF--LLNQIYTASNMKTEIKFMMF 241
Cdd:MTH00199  268 QTKIKRLLAYSGIGHMGFILFGVaigsFESIQASLIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPVIALTLA 347

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1331215848 242 LSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRI 292
Cdd:MTH00199  348 LTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 1.77e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.89  E-value: 1.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIqmeYLMSW 86
Cdd:PRK05777  108 LVLFALL--GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLL---YGATG 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  87 ESEMVPSMLISSSLLL------------------KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMIL-------- 140
Cdd:PRK05777  183 SLSFAGIAKALADGSGnsllllfglvfllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaf 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 141 -SYCIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM-----ISSMISSENIWeIYFVIYSTLSL----I 210
Cdd:PRK05777  263 gGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaAGTAEGYSAVL-FYLLAYLFMTLgafgV 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 211 LVLLFKQM----NLFLLNQIYTASNMKTeikFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITL 286
Cdd:PRK05777  342 ISLLRRKGgeaeSISDFAGLSKRSPLLA---AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418


                  ....*.
gi 1331215848 287 YYYLRI 292
Cdd:PRK05777  419 FYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-337 5.40e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 5.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIqmeYLMSW 86
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLI---YGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  87 ESEMVPSMLISSSLLL------------------KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIA---PMMILSYCIQ 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLnisllllgivlilvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIL 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 146 ------LSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISSENIWE---IYFVIYSTLSLILVLLF 215
Cdd:TIGR01770 262 fgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 216 KQMNLFLLNQIYTASNMKTEIK------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYY 289
Cdd:TIGR01770 342 SLLRSYKDEWIEYISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1331215848 290 LRIsfSALILSYTENSWSMNAK-NKSFKFTLPITVMVSTTGLMLTSTLI 337
Cdd:TIGR01770 422 LRV--VKVMYFDKPERRIPSNPqSKAQSLLLSISALFILFLGLFPSLIL 468
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 7.69e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.88  E-value: 7.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  10 FLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLIQ-------MEY 82
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  83 LMSWESEMVPSMLISSSLL------LKIGAAPFHFWFPEVMGA-----SEWFNCLVLmtwqKIAPMMIL---------SY 142
Cdd:COG0651   192 LAARLAELDPGLLLAAFALllvgfgIKAALFPLHFWLPDAYPAapspvSALLSGLLT----KVGVYAILrvltllfgaDP 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 143 CIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-ISSENIWE--IYFVIYSTLSLILvllfkqmn 219
Cdd:COG0651   268 ALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgaLFHLLNHALAKAL-------- 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 220 LFLLNQIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITL 286
Cdd:COG0651   340 LFLAAGAIERATGTRDLDklgglgkrmpltaAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTL 419


                  ....*.
gi 1331215848 287 YYYLRI 292
Cdd:COG0651   420 AYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 8.69e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 8.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  16 MGTILSISSNSWFGVWMGLEINLLSFIPM---------LTNNKNSMINESSIKYFIVQAMASTMLLFSILL--------- 77
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  78 ----IQMEYLMSWESEM----VPSMLISSSLLLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNF 149
Cdd:MTH00198  279 mlgtILSATLETTNIELrqgsLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 150 IFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI-----SSMISSENIWeIYFVIYSTLSLILVLLFKQMNLFllN 224
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsaGTYESLQASW-TYAVTYLVSALASFTVICTLEEF--G 435

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 225 QIYTASNMKTE-----------------------IKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAI---- 277
Cdd:MTH00198  436 TRTPTSRQRDGsfgnynlvrrlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylv 515

                         330
                  ....*....|....*...
gi 1331215848 278 ---MVMLTMITLYYYLRI 292
Cdd:MTH00198  516 alfAIICTCISAFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 103-328 2.22e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.56  E-value: 2.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 103 KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMM--------ILSYCIQLSNFIFTIV-ILSIIIGAMGGLNQTSLRH 173
Cdd:CHL00049  227 KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEILaILSMILGNLIAITQTSMKR 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 174 LLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLL--FKQMNLFLL----NQI--YTASNMKTEI-KFMMFLSL 244
Cdd:CHL00049  307 MLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIFMNLgtFACIVLFGLrtgtDNIrdYAGLYTKDPFlALSLALCL 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 245 LSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRI------SFSALILSYTENS--WSMNAKNkSFK 316
Cdd:CHL00049  387 LSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIikllmtGRNQEITPYVRNYrrSPLRSNN-SIE 465

                         250
                  ....*....|..
gi 1331215848 317 FTLPITVMVSTT 328
Cdd:CHL00049  466 LSMIVCVIASTI 477
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
103-337 1.86e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 58.52  E-value: 1.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 103 KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIA----PMMILSYCIQLSN----FIFTIV-ILSIIIGAMGGLNQTSLRH 173
Cdd:PRK02504  223 KISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqwkLLFTALaILSMVLGNVVALAQTSMKR 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 174 LLAYSSISHLGW-MISSMISSENiweiyfvIYSTLSL-ILVLLFkqMNL-----FLLNQIYTASNMKTE----------I 236
Cdd:PRK02504  303 MLAYSSIGQAGFvMIGLVAGTEA-------GYASMVFyLLAYLF--MNLgafacVILFSLRTGTDQISDyaglyqkdplL 373

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 237 KFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRI----------SFSALILSYTENSW 306
Cdd:PRK02504  374 TLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVikmmvvkepqEMSDVVKNYPEINW 453

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1331215848 307 SMNAKnKSFKFTLPITVMVSTTGLMLTSTLI 337
Cdd:PRK02504  454 NLPGM-RPLRVGLVLCVIATALAGILSNPLF 483
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-296 1.50e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.87  E-value: 1.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  55 ESSIKYFIVQAMASTMLLFSILLI-------QMEYLMSWESE------MVPSMLISSSLLLKIGAAPFHFWFPEVMGA-- 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLygqygtlNMAYLAVKMSEnptvvaKIALALFIAGLAMKSGAVPVHMWLPDAYPAap 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 120 SEWFNCLVLMTWQKIAPMMILSYCI--------QLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI---- 187
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALARVLFSIygpainlaTVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglg 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 188 ------SSMISSE--------NIWEI--YFVIYSTLSLILVLLFKQMNLFLLNQIY-TASNM-KTEIKFMmfLSLLSIGG 249
Cdd:PRK08376  332 vglaalGDPAMASygeialagGIYHIvnHALYKALLFLTAGAVIYETGTRNLNELGgLARTMpKTTIAFL--IGAAAIVG 409

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1331215848 250 LPPFIGFLPKWMVMQSMMEMNmTSLMAIMVMLTMITLYYYLRISFSA 296
Cdd:PRK08376  410 LPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA 455
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-292 2.29e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.27  E-value: 2.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 146 LSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMIssmisseniweIYFVIYSTLSLI--LVLLFKQM----N 219
Cdd:PRK08375  270 LGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYIL-----------LGLALLTPLALAagLLHLLHHAlmkgA 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 220 LFL-LNQIYTASNMKT---------EIKFMM---FLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITL 286
Cdd:PRK08375  339 LFLaAGAIEVTYGTRRlselsglgrRMPLTAaafAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL 418


                  ....*.
gi 1331215848 287 YYYLRI 292
Cdd:PRK08375  419 LYFLRI 424
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
146-296 8.29e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.42  E-value: 8.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 146 LSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSmISSENIWEIYFVIYSTLSLILVLLFkqmnLFLLNQ 225
Cdd:PRK12663  271 LHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLG-LALGTPAGINGAIFYLVHDMVVKTA----LFLIAG 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 226 IYTASNMKTEIKFM-------------MFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLRI 292
Cdd:PRK12663  346 SLVRLTGYRSLQYLgglyrkeplfgalFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425


                  ....
gi 1331215848 293 SFSA 296
Cdd:PRK12663  426 FFLA 429
PRK12650 PRK12650
DUF4040 family protein;
108-298 8.51e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.81  E-value: 8.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 108 PFHFWFPEVMGA----SEWFNCLVLMtwqKIAPMMILSYCIQLSN------FIFTIVILSIIIGAMGGLNQTSLRHLLAY 177
Cdd:PRK12650  226 PFHFWLPEAMAAitpvSAFLHAAAVV---KAGIYLLLRFSPVFHDvavwnwLLIIVGMITALMGAVFAVQKTDLKKLTAY 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 178 SSISHLGWmISSMISSENIWEIYFVIYSTLSLIlvlLFKQmNLFLL-----NQIYT-------ASNMKTEIKF-MMFLSL 244
Cdd:PRK12650  303 STVSQLGW-IVATIGVGTPFALTAAVVHTLAHA---LFKS-SLFMLigvvdHQAGTrdirrlgSLWRRMPFTFvSVTIAA 377

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1331215848 245 LSIGGLPPFIGFLPKWMVMQSMME-----MNMTSLMAIMVMLTMITLYYYLRISFSALI 298
Cdd:PRK12650  378 LSMAAVPPLFGFVSKEGMLTAFLEapggnAGVVLLLVGAALGAVFTFAYSARLVLGAFV 436
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-292 1.70e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.58  E-value: 1.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 145 QLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISSENI---WEIYFVIY-----STLSLILVLLFK 216
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYYVAHhitvqTTLFLVVGLIER 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1331215848 217 QMNLFLLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMT---SLMAIMVMLTMITLYYYLRI 292
Cdd:PRK12665  351 QAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWlawALVAGGVVTSLLTLYAVARV 429
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
53-295 2.12e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 49.26  E-value: 2.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  53 INESSIKYFIVQAMASTMLLFSILLIQMEYLMSwesemvpsmlissslllkIGAAPFHFWFPEVMGASEWFNCLVLMTWQ 132
Cdd:PRK06277  180 LNITDIHNALLVNPTSPVIYGGLLLLIFGLLYG------------------SGLPPFHTIKSDIYAKAKPFGSALLQTFS 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 133 K---IAPMMI-------LSYCIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-------ISSEN 195
Cdd:PRK06277  242 KfvlVALMLVifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLalgtplgIVAGI 321

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 196 IWEIYFVIY-STLSLILVLLFKQMNLFLLNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSL 274
Cdd:PRK06277  322 FHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPEL 401

                         250       260
                  ....*....|....*....|.
gi 1331215848 275 MAIMVMLTMITLYYYLRISFS 295
Cdd:PRK06277  402 AIIMIIVSIGTFVSMMKAFYL 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-295 2.85e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 146 LSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW--MISSMISSeniweiyFVIYSTLSLILVLLFKQMNLFLL 223
Cdd:PRK12667  294 LSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYifMGIGIGTQ-------LGLAAALFHIINHAIAKSLLFLA 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 224 NQIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYL 290
Cdd:PRK12667  367 SGVFIHAAGTRDIDelaglgrkmpiasFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYF 446


                  ....*
gi 1331215848 291 RISFS 295
Cdd:PRK12667  447 RAWYS 451
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-305 3.54e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 45.19  E-value: 3.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   3 NNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLI---- 78
Cdd:PRK06589  114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILiytk 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  79 --QMEYLMSWESEMVPSMLISSSLLLKIGAA---PFHFWFPEVMGASEWFNCLV---------LMTWQKIAPMM----IL 140
Cdd:PRK06589  194 tgNLDFVSGGLFSKNQSIILLLMFIYGIAKTaifPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsYL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 141 SYCIQLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI-SSMISSENIWEIYFVIYSTLSLILVLLFKQMN 219
Cdd:PRK06589  274 QRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlSAFILTPKALGAAILHLVSHSFAKICLFYSMG 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 220 LFL-------LNQIYTASNMKTEIKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSL----MAIMVMLTMITLYY 288
Cdd:PRK06589  354 SIYslkkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLsiivMLVVIASSILSALY 433

                         330
                  ....*....|....*..
gi 1331215848 289 YLRISFSALILSYTENS 305
Cdd:PRK06589  434 LLKILSSIYKPSLSENS 450
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 14-325 1.21e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 42.94  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  14 LMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINessikYFIVQAMASTMLLFSILLIQMEYLMswesemvps 93
Cdd:MTH00091    3 LSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNY-----FVLQESLGLLFLLFSFGYFQFLILM--------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  94 mlisssllLKIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIVILSIIIGAMggLNQTSLRH 173
Cdd:MTH00091   69 --------MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKN 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 174 LLAYSSISHLGWMISSMISSENIWEIYFVIYSTLSLILVLLFkqmnlfllnqiytasNMKTEIKFMMFLSLLSIGGLPPF 253
Cdd:MTH00091  139 LLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKF---------------NNVNKLNFVSWETLLVFMNLPFS 203

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1331215848 254 IGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYyylrISFSALILSYTENSWSMNAKNKSFKFTLPITVMV 325
Cdd:MTH00091  204 VTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLS----LSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-292 2.50e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 42.68  E-value: 2.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   1 MNNNSTKLLFLSTLMMGTILSISSNSWFGVWMGLEINLL-SFIPMLTNNKNSmiNESSIKYFIVQAMASTMLLFSILLI- 78
Cdd:PRK08668   94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKES--RKASLKYFVLSAIGAYAMLYAIFLIy 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  79 -------------QMEYLMSWESEMVPSMLISSSLLLKIGAAPFHFWFPEV------------------MGASEWFNCLV 127
Cdd:PRK08668  172 aktgtfdfadisqGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAyseapqsfsavlsgqlskLGAYGFLLVLY 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 128 LMTWQKIAPMMILSYCIQLSNFIF-TIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM---ISSMISSENIWEIYFVI 203
Cdd:PRK08668  252 VLPGTKLFSEFGTYRGVPLFNYILaWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIlvgLGLGTSLGFAGGLFHVF 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 204 YSTlslilvlLFKQMnLFLLNQIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMN 270
Cdd:PRK08668  332 NHA-------LFKGL-FFLIFAAVIYRTGTTKISemggliekmpftfAMYLVAIISLAGIPPMSGFASKWLIFEALISKG 403

                         330       340
                  ....*....|....*....|..
gi 1331215848 271 MTSLMAIMVMLTMITLYYYLRI 292
Cdd:PRK08668  404 MPITAFMAFFGSIGSFLYVFRP 425
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-263 3.63e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 103 KIGAAPFHFWFPEVMGASEWFNCLVLMTWQKIAPMMILSYCIQLSNFIFTIV----ILSIIIGAMGGLNQTSLRHLLAYS 178
Cdd:PRK07234  197 KGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVrifgVGTALLGVLFALLEKDLKRMLAFS 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 179 SISHLGWMISSMISSEniweiyfvIYStLSLILVLLFkqmnLFLLNQIYTASNMKTEIKFM------MFLSL--LSIGGL 250
Cdd:PRK07234  277 TISQLGFILAAPLVGG--------LYA-LAHGLVKST----LFLCAGALPSRNFTELISQMlgigkwIPLTMasFSIAGF 343

                         170
                  ....*....|...
gi 1331215848 251 PPFIGFLPKWMVM 263
Cdd:PRK07234  344 PLLAGFVSKVLTL 356
PRK12646 PRK12646
DUF4040 family protein;
108-325 1.45e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.51  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 108 PFHFWFPEVMGASEWFNCLV---LMTWQKIAPMMILSYCIQLSNFIFTIV----ILSIIIGAMGGLNQTSLRHLLAYSSI 180
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLhsaTMVKAGIFLLFRFTPLLGLSNMYIYIVtfvgLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 181 SHLGwMISSMI---------SSENIWEIYFVIystlslILVLLFKQMN-------LFL----------LNQIYTASNMKT 234
Cdd:PRK12646  308 SQLG-MIMAMVgigggyaqhQQDAIASIYVFV------LFAALFHLMNhaifkcaLFMgvgiidheagTRDIRILSGMRQ 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 235 EIKFM---MFLSLLSIGGLPPFIGFLPKWMVMQSMMEMN---------MTSLMAIMVMLTMITLYYYLRISFSALILSYT 302
Cdd:PRK12646  381 LFPKMnlvMTIAALSMAGVPFLNGFLSKEMFLDALTQTGqlsqfslisMIIIVFIGVIASIFTFTYALYMVKEVFWGKYD 460

                         250       260
                  ....*....|....*....|...
gi 1331215848 303 ENSWSMNAKNKSFKFTLPITVMV 325
Cdd:PRK12646  461 SKVFTKKNIHEPWLFSLPSLILM 483
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 145-184 3.16e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 39.29  E-value: 3.16e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1331215848 145 QLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLG 184
Cdd:COG1008   273 YFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 108-187 3.17e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.15  E-value: 3.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 108 PFHFWFPEVMGASEWFNCLVLM-TWQKIAPMMILSYCIQL--------SNFIFTIVILSIIIGAMGGLNQTSLRHLLAYS 178
Cdd:TIGR01972 221 PLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYS 300


                  ....*....
gi 1331215848 179 SISHLGWMI 187
Cdd:TIGR01972 301 SISHMGFVL 309
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 8-292 3.92e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.98  E-value: 3.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848   8 LLFLsTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNSMINESSIKYFIVQAMASTMLLFSILLI-------QM 80
Cdd:PRK08377  112 MLFL-LLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIygatgtlNM 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848  81 EYLMSWESEMVPSMLISSSLLLKIGAA------PFHFWFPEVMGA-----SEWFNCLVLMTwqKIAPMMILSYCIQLSN- 148
Cdd:PRK08377  191 AHIAQLAGTIDPTVAQVGLALLIFGLAveaelfPLNAWAPDAYQAaphpiTVMFSAFVVKA--GLYAMARILYLMQNANg 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 149 ------FIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-ISSENIWEIYFVIYSTLSLILVLLFKQMNLF 221
Cdd:PRK08377  269 wssvlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALaLGTQAGVDAGVFHMINHAIVKALLFLAVGYV 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 222 llnqIYTASNMKTE-----------IKFMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYL 290
Cdd:PRK08377  349 ----GITLGGTEIEkfeglgkrmplTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYF 424


                  ..
gi 1331215848 291 RI 292
Cdd:PRK08377  425 RL 426
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 148-292 5.07e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.39  E-value: 5.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 148 NFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM---ISSMISSENIWEIYFVIYStlslilvLLFKQMnLFLLN 224
Cdd:PRK07691  276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlvgVAMMTESGMIGAIYYLIHD-------MIVKAA-LFLLI 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215848 225 QIYTASNMKTEIK-------------FMMFLSLLSIGGLPPFIGFLPKWMVMQSMMEMNMTSLMAIMVMLTMITLYYYLR 291
Cdd:PRK07691  348 GIMIKITGTTDLKkmgglikrypvlgWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIK 427


                  .
gi 1331215848 292 I 292
Cdd:PRK07691  428 I 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 145-187 7.83e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.87  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1331215848 145 QLSNFIFTIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI 187
Cdd:PRK05846  275 EFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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