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Conserved domains on  [gi|1331215860|ref|YP_009454610|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Caryanda elegans]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 5.53e-148

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 418.02  E-value: 5.53e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLGGNFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILL 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 5.53e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 418.02  E-value: 5.53e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLGGNFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILL 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
13-302 3.96e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.90  E-value: 3.96e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  13 VLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMISLIVW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  93 VIFPYLTYM--CSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSFNMFD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 171 FMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLALIFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1331215860 251 G------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-297 1.88e-88

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 267.38  E-value: 1.88e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   4 DLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  84 NLMISLIVWVIFPYLTYMC--SFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 162 LIGSFNMFDFMNYQF-YCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1331215860 241 SMLLALIFLGG-----NFYSFT-------FFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:COG1005   247 SALATTLFLGGwlgpfPILPLGglpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.55e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 157.56  E-value: 1.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  15 LIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMISLIVWVI 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  95 FP----------YLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 245 ALIFLGG-NFYSFT--------------FFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKIL 309
Cdd:NF040610  259 VLLFLGGwNLPGFVtdipvlgiilptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGLY 338


                  .
gi 1331215860 310 L 310
Cdd:NF040610  339 L 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 5.53e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 418.02  E-value: 5.53e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLGGNFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILL 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-308 1.60e-127

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 365.90  E-value: 1.60e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   7 MFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLM 86
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  87 ISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSF 166
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 167 NMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLAL 246
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1331215860 247 IFLGGNFYSFTFF--VKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKI 308
Cdd:MTH00225  242 LFFGGFFVTIDLFliLKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-306 4.97e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 341.85  E-value: 4.97e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   6 FMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNL 85
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  86 MISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGS 165
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 166 FNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLA 245
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 246 LIFLGGNF-----YSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGL 306
Cdd:MTH00143  241 VLFFGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 9-313 2.98e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 307.22  E-value: 2.98e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   9 ILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMIS 88
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  89 LIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSFNM 168
Cdd:MTH00218   85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 169 FDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLALIF 248
Cdd:MTH00218  165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1331215860 249 LGGNFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLISL 313
Cdd:MTH00218  245 LGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASL 309
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-313 9.65e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 303.85  E-value: 9.65e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLGGNFY-------SFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLISL 313
Cdd:MTH00071  244 TILFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGI 319
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-313 1.40e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 303.36  E-value: 1.40e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLG-------GNFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLISL 313
Cdd:MTH00111  244 TILFLNpstlnlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGL 319
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-313 4.57e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 301.93  E-value: 4.57e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   7 MFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLM 86
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  87 ISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSF 166
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 167 NMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLAL 246
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1331215860 247 IFLGG-------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLISL 313
Cdd:MTH00104  241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASI 314
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-310 8.49e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 298.19  E-value: 8.49e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 245 ALIFLGGNfYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILL 310
Cdd:MTH00195  241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-310 2.33e-98

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 292.65  E-value: 2.33e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   3 YDLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPV 82
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  83 FNLMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 163 IGSFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 243 LLALIFLGGNFYSFTFF--------VKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILL 310
Cdd:MTH00040  241 LSVILFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLL 316
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-313 7.36e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 288.81  E-value: 7.36e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   1 MFYDLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFS 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  81 PVFNLMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 161 ILIGSFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 241 SMLLALIFLGGNFY-------SFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLISL 313
Cdd:MTH00134  241 NTLSAILFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320
NADHdh pfam00146
NADH dehydrogenase;
13-302 3.96e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.90  E-value: 3.96e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  13 VLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMISLIVW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  93 VIFPYLTYM--CSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSFNMFD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 171 FMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLALIFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1331215860 251 G------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 8-311 8.52e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 272.81  E-value: 8.52e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   8 FILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMI 87
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  88 SLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSFN 167
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 168 MFDFMNYQfYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLALI 247
Cdd:MTH00010  165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1331215860 248 FLGGNFYSF----TFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKILLI 311
Cdd:MTH00010  244 FTSFIPSIFisdlMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-297 1.88e-88

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 267.38  E-value: 1.88e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   4 DLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  84 NLMISLIVWVIFPYLTYMC--SFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 162 LIGSFNMFDFMNYQF-YCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1331215860 241 SMLLALIFLGG-----NFYSFT-------FFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:COG1005   247 SALATTLFLGGwlgpfPILPLGglpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-297 1.33e-82

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 252.42  E-value: 1.33e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLTY--MCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:PRK06076   89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 163 IGSFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:PRK06076  169 AGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1331215860 243 LLALIFLGG----------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:PRK06076  249 LITTLFLGGwlppfplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 5-308 1.38e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 252.34  E-value: 1.38e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   5 LFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFN 84
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  85 LMISLIVWVIFPYLT--YMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00054   81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 163 IGSFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSM 242
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1331215860 243 LLALIFLGGNFYSFT----------FFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKI 308
Cdd:MTH00054  241 FGVILFLGGWLVISGptsyfsnfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILI 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-306 1.36e-81

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 250.04  E-value: 1.36e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   1 MFYDLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFS 80
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  81 PVFNLMISLIVWVIFPYL--TYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 159 LIILIGSFNMFDFMNYQF-YCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSI 237
Cdd:MTH00216  161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1331215860 238 IFMSMLLALIFLGG--------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGL 306
Cdd:MTH00216  241 ILMSCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-308 2.58e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 214.11  E-value: 2.58e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   3 YDLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPV 82
Cdd:MTH00029    4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  83 FNLMISLIVWVI--FPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00029   84 ISFTLAILAWAIvtMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 161 ILIGSFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:MTH00029  164 LCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 241 SMLLALIFLGG-----------------------NFYSFTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:MTH00029  244 SCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323

                         330
                  ....*....|.
gi 1331215860 298 NFFIFFIGLKI 308
Cdd:MTH00029  324 GLVILTAGILI 334
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-308 1.21e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 194.73  E-value: 1.21e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  11 NFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMISLI 90
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  91 VWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGSFNMFD 170
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 171 FMNYqfycWFIIISFPLFLscfaSCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLLALIFLG 250
Cdd:MTH00090  161 SFSL----SLFVIYLPFLI----MIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1331215860 251 GNFYSFTFFVKLaimsfgFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKI 308
Cdd:MTH00090  233 FSFLMLFLIFSL------LIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-304 5.40e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.40  E-value: 5.40e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   6 FMFILNFVLLIICVLIsVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNL 85
Cdd:MTH00058    2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  86 MISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGS 165
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 166 FNMFDFMnyqFYCWFIIISFPLFLSCFASC-LAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:MTH00058  161 YSLVDFY---YSGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 245 ALIFLGGNFYSFTFFVKLaimsFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFI 304
Cdd:MTH00058  238 SVLFFGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.55e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 157.56  E-value: 1.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  15 LIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSPVFNLMISLIVWVI 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  95 FP----------YLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 165 SFNMFDFMNYQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFMSMLL 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 245 ALIFLGG-NFYSFT--------------FFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFIGLKIL 309
Cdd:NF040610  259 VLLFLGGwNLPGFVtdipvlgiilptlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGLY 338


                  .
gi 1331215860 310 L 310
Cdd:NF040610  339 L 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 2-297 3.26e-30

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 117.36  E-value: 3.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   2 FYDLFMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFLGIPQPFSDAIKLICSEQPIPIMSNYLFYYFSP 81
Cdd:CHL00032   23 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  82 ---VFNLMISLIVwVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:CHL00032  103 siaVISILLSYLV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 159 LIILIGSFNMFDFMN----YQFYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY 234
Cdd:CHL00032  182 ISLLSNSLSTVDIVEaqskYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 235 TSIIFMSMLLALIFLGG-----------NFYS--------------FTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAW 289
Cdd:CHL00032  262 LNLLVSSLFVTVLYLGGwnlsipyifipELFEinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGW 341


                  ....*...
gi 1331215860 290 KSFLPLSL 297
Cdd:CHL00032  342 KFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 5.23e-24

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 99.10  E-value: 5.23e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860   6 FMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPnkvgflGIPQPFSDAIKLICSEQPIPIMSNYLFYyFSPVFNL 85
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFR-AAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860  86 MISLIVWVIFPYLTYMCSFSYG--FLFFLCCTSLGVYTVMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILI 163
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 164 GSFNMFDFMNYQ---FYCWFIIISFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIIFM 240
Cdd:COG0650   154 GSTSLSDIVAYQaahGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215860 241 SMLLALIFLGGNFYS------FTFFVKLAIMSFGFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFI 304
Cdd:COG0650   234 LSLFVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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