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Conserved domains on  [gi|1511244835|ref|YP_009531191|]
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cytochrome b (mitochondrion) [Ornebius fuscicerci]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 656.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  12 LKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  92 FICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 172 DNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQLLFWMYSV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1511244835 332 TILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNF 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 656.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  12 LKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  92 FICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 172 DNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQLLFWMYSV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1511244835 332 TILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNF 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 1.61e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 341.38  E-value: 1.61e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  12 LKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  92 FICLYLHVGRGIYYNSFNL--NLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 170 AVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNT----DKIPFHPYFTLKDIIGIIILISSLIMLS 244
Cdd:COG1290   180 FPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 245 LLNPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLN 322
Cdd:COG1290   260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1511244835 323 QLLFWMYSVTILLLTWIGARPveDPFIITGQILTIFYFSLYL 364
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.81e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.54  E-value: 6.81e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  10 PLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  90 FFFICLYLHVGRGIYYNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1511244835 168 GFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 8.54e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 8.54e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  19 LIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  99 VGRGIYYNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1511244835 177 TRFFTFHFMLPFIISAFVMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 2.07e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 2.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPK-NKFMTNQFYPLNQLLFWMYSVTILLLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 1511244835 338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 656.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  12 LKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  92 FICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 172 DNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQLLFWMYSV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1511244835 332 TILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNF 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 604.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYKLWDNLL 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 592.65  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLM 365
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 584.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYKLWDNLL 377
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00100
cytochrome b; Provisional
 4-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 578.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   4 PLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  84 HANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 164 WIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIML 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 244 SLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1511244835 324 LLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYL 364
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
CYTB MTH00131
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 577.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   5 LRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  85 ANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 165 IWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 245 LLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQL 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1511244835 325 LFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYL 364
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 576.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   5 LRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  85 ANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 165 IWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 245 LLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQL 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1511244835 325 LFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLM 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 575.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYKLWDNLL 377
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 546.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   4 PLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTI 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  84 HANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 164 WIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIML 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 244 SLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1511244835 324 LLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYKLWDNLL 377
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00224
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 509.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYKLWDNLL 377
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 4-365 8.75e-170

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 478.81  E-value: 8.75e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   4 PLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTI 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  84 HANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 164 WIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIML 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 244 SLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1511244835 324 LLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLM 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-365 2.37e-164

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 464.95  E-value: 2.37e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835   1 MNKPLRTNHPLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  81 RTIHANGASFFFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKS 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 161 LVQWIWGGFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 241 IMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1511244835 321 LNQLLFWMYSVTILLLTWIGARPVEDPFIITGQILTIFYFSLYLM 365
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 17-365 4.10e-128

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 373.12  E-value: 4.10e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  17 NALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFFICLY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  97 LHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 177 TRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLN--PYLLGDP 254
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 255 DNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQLLFWMYSVTIL 334
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1511244835 335 LLTWIGARPV-EDPFIITGQILTIFYFSLYLM 365
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-371 5.92e-127

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 368.88  E-value: 5.92e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  13 KIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  93 ICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 173 NATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDiIGIIILISSLIMLSLLNPYLLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 253 DPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLpknKFMTNQFYPLNQLLFWMYSVT 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1511244835 333 ILLLTWIGARPVEDPFIITGQILTIFYFSLYLMNFLFYK 371
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 1.61e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 341.38  E-value: 1.61e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  12 LKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  92 FICLYLHVGRGIYYNSFNL--NLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 170 AVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNT----DKIPFHPYFTLKDIIGIIILISSLIMLS 244
Cdd:COG1290   180 FPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 245 LLNPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLN 322
Cdd:COG1290   260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1511244835 323 QLLFWMYSVTILLLTWIGARPveDPFIITGQILTIFYFSLYL 364
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.81e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.54  E-value: 6.81e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  10 PLLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  90 FFFICLYLHVGRGIYYNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1511244835 168 GFAVDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-372 1.26e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 258.37  E-value: 1.26e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  11 LLKIINNALIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASF 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  91 FFICLYLHVGRGIYYNSFNLNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFA 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 171 VDNATLTRFFTFHFMLPFIISAFVMIHLLFLHQTGSNNPLGV-NSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPY 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 250 LLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGviaLVLSIAILFiFPLLPKNKFmTNQFYPLNQLLFWMY 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLF-FLWVPTFNG-SSVYSVWRQVNFWLI 315

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1511244835 330 SVTILLLTWIGARPVEDPFIITGQIltifyFSLYLMNFLF-YKL 372
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQL-----FSVLMVLLLFiFKL 354
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 8.54e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 8.54e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  19 LIDLPAPSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  99 VGRGIYYNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1511244835 177 TRFFTFHFMLPFIISAFVMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 6.82e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.95  E-value: 6.82e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 208 NPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSLLNPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 288 KLGGVIALVLSIAILFIFPLLpKNKFMTNQFYPLNQLLFWMYSVTILLLTWIGARPVEDPFIITGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFL-ENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.44e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.85  E-value: 2.44e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  89 SFFFICLYLHVGRGIYYNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRkpRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 167 GGFAVDNATLTRFFTFHFM-LPFIISAFVMIHLLFLHQTGSNNPLGVNSNTDKIPFHPYFTLKDIIGIIILISSLIMLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1511244835 246 LNPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.56e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 134.91  E-value: 3.56e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPKNKFMTNQFYPLNQLLFWMYSVTILLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1511244835 339 IGARPVEDPFIITGQILTIFY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 4.03e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.38  E-value: 4.03e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  34 FGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFFICLYLHVGRGIYYNSFN--LN 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 112 LTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVDNATLTRFFTFH-FMLPFII 190
Cdd:PRK03735  124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1511244835 191 SAFVMIHLLFLHQTGSNNPL 210
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 2.92e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 123.29  E-value: 2.92e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835  25 PSNISSWWNFGSLLGLCLMIQILTGIFLAMHYTANIDLAFYSINHIYRDVNNGWLIRTIHANGASFFFICLYLHVGRGIY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 105 YNSFN--LNLTWNVGVIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPFLGKSLVQWIWGGFAVDNATLTRFFTF 182
Cdd:CHL00070  107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1511244835 183 H-FMLPFIISAFVMIHLLFLHQTGSNNPL 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 247-348 1.54e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 247 NPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPK-NKFMTNQFYPLNQLL 325
Cdd:COG5679    59 DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAV 133

                          90       100
                  ....*....|....*....|...
gi 1511244835 326 FWMYSVTILLLTWIGARPVEDPF 348
Cdd:COG5679   134 FLFGTLVTLWLGIGAALPIDKSL 156
petD CHL00058
cytochrome b6/f complex subunit IV
 248-313 2.13e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.78  E-value: 2.13e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1511244835 248 PYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPK-NKF 313
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKF 120
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-345 2.07e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 2.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511244835 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIFPLLPK-NKFMTNQFYPLNQLLFWMYSVTILLLT 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144


                  ....*...
gi 1511244835 338 WIGARPVE 345
Cdd:TIGR01156 145 IGATLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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