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Conserved domains on  [gi|1571847627|ref|YP_009553672|]
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ORF2 [Potexvirus sp.]

Protein Classification

TGBp1 family protein( domain architecture ID 12020197)

TGBp1 family protein such as viral movement and silencing protein TGBp1 (also called triple gene block protein 1) that transports viral genome to neighboring plant cells directly through plasmosdesmata without any budding, and acts as a suppressor of RNA-mediated gene silencing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Viral_helicase1 pfam01443
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ...
 55-253 5.73e-39

Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.


:

Pssm-ID: 366646 [Multi-domain]  Cd Length: 227  Bit Score: 135.20  E-value: 5.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627  55 LVVHAVAGAGKSTVIREFLQEVFNSSGQ----TLGIPDPPTLEGAYIKA---ATVPLSNHFNILDEYSVQPLRH------ 121
Cdd:pfam01443   1 IVVHGVPGCGKSTLIRKLLRTSRVIRPTaelrTEGKPDLPNLNVRTVDTflmALLKPTGKILILDEYTLLPPGYilllaa 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627 122 ----SWDAVFSDPLQNPAH-----PVRPHFICTVSHRLGPEVCGLLRDLGISISSSGSRSQTVFRGGVFESELKG---TL 189
Cdd:pfam01443  81 isgaKLVILFGDPLQIPYHsrapsFLIPHFPSSLSHRVGRRTTYLLPSLRAPILSAKGFEVVVERSGEYKVDYDPngvLV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1571847627 190 IALDEEIRDLLTAHALNPVCPHEVLGREFPVVTVLSSQPIPNI---KDRSGLYIALTRATDELRILA 253
Cdd:pfam01443 161 LVYLTFTQALKESLGVRVTTVHEVQGLTFDSVTLVLDTDTDLLiisDSPEHLYVALTRHRKSLHILT 227
 
Name Accession Description Interval E-value
Viral_helicase1 pfam01443
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ...
 55-253 5.73e-39

Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.


Pssm-ID: 366646 [Multi-domain]  Cd Length: 227  Bit Score: 135.20  E-value: 5.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627  55 LVVHAVAGAGKSTVIREFLQEVFNSSGQ----TLGIPDPPTLEGAYIKA---ATVPLSNHFNILDEYSVQPLRH------ 121
Cdd:pfam01443   1 IVVHGVPGCGKSTLIRKLLRTSRVIRPTaelrTEGKPDLPNLNVRTVDTflmALLKPTGKILILDEYTLLPPGYilllaa 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627 122 ----SWDAVFSDPLQNPAH-----PVRPHFICTVSHRLGPEVCGLLRDLGISISSSGSRSQTVFRGGVFESELKG---TL 189
Cdd:pfam01443  81 isgaKLVILFGDPLQIPYHsrapsFLIPHFPSSLSHRVGRRTTYLLPSLRAPILSAKGFEVVVERSGEYKVDYDPngvLV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1571847627 190 IALDEEIRDLLTAHALNPVCPHEVLGREFPVVTVLSSQPIPNI---KDRSGLYIALTRATDELRILA 253
Cdd:pfam01443 161 LVYLTFTQALKESLGVRVTTVHEVQGLTFDSVTLVLDTDTDLLiisDSPEHLYVALTRHRKSLHILT 227
 
Name Accession Description Interval E-value
Viral_helicase1 pfam01443
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ...
 55-253 5.73e-39

Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.


Pssm-ID: 366646 [Multi-domain]  Cd Length: 227  Bit Score: 135.20  E-value: 5.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627  55 LVVHAVAGAGKSTVIREFLQEVFNSSGQ----TLGIPDPPTLEGAYIKA---ATVPLSNHFNILDEYSVQPLRH------ 121
Cdd:pfam01443   1 IVVHGVPGCGKSTLIRKLLRTSRVIRPTaelrTEGKPDLPNLNVRTVDTflmALLKPTGKILILDEYTLLPPGYilllaa 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847627 122 ----SWDAVFSDPLQNPAH-----PVRPHFICTVSHRLGPEVCGLLRDLGISISSSGSRSQTVFRGGVFESELKG---TL 189
Cdd:pfam01443  81 isgaKLVILFGDPLQIPYHsrapsFLIPHFPSSLSHRVGRRTTYLLPSLRAPILSAKGFEVVVERSGEYKVDYDPngvLV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1571847627 190 IALDEEIRDLLTAHALNPVCPHEVLGREFPVVTVLSSQPIPNI---KDRSGLYIALTRATDELRILA 253
Cdd:pfam01443 161 LVYLTFTQALKESLGVRVTTVHEVQGLTFDSVTLVLDTDTDLLiisDSPEHLYVALTRHRKSLHILT 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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