|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.76e-161 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 455.05 E-value: 1.76e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.54e-147 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 419.21 E-value: 2.54e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSmNTSLMLTLGLM 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 1593549708 321 QKRY-LAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.04e-139 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 399.68 E-value: 1.04e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.91e-126 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 365.32 E-value: 3.91e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHK-T 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFEnT 320
|
330 340
....*....|....*....|....*..
gi 1593549708 320 NQKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.08e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 311.52 E-value: 6.08e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*.
gi 1593549708 321 QKRYLAPMTALATSMLPITPTLLTIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-339 |
5.09e-90 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 273.34 E-value: 5.09e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 LGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLM 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWRHKTN 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*
gi 1593549708 321 QKRY------LAPMTALATSMLPIT 339
Cdd:MTH00041 321 ITVYgvilsiLSSISILGLLLIPLF 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-300 |
2.40e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 196.97 E-value: 2.40e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 1 MNPYASTIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAwt 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 81 lgqwSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTaqsMNTSLMLTLGLM 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYS 300
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS 292
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-302 |
6.03e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 180.08 E-value: 6.03e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWsitqmsnn 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 93 ISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNT-SLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00144 85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYItMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI-VSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLSL 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTI 302
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
12-310 |
8.64e-50 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 169.19 E-value: 8.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 12 SLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITnawtlgQWSITQMSN 91
Cdd:MTH00011 14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 92 NISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00011 88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRIsYYSTITLPPNSTN 310
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL-IFNFMYLSPTFSS 305
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
12-302 |
1.18e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 150.21 E-value: 1.18e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 12 SLIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSItqmsn 91
Cdd:MTH00197 6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 92 niSCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPmsLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLN 171
Cdd:MTH00197 81 --SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 172 QTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 252 AGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTI 302
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
14-299 |
5.71e-32 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 124.84 E-value: 5.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------------LSSITNA 78
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLygisllygatgslnLAGIAAA 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 79 wtLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM----MTAQSMNTSLM 154
Cdd:COG1007 192 --LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAADWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWM-VTILTLSPK-LTLLTFY--TYITMTSTMFLMIKLLET-NK 226
Cdd:COG1007 270 LLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLSRkGG 349
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1593549708 227 ISTMMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYY 299
Cdd:COG1007 350 EAEEIEDLAGLarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
6.81e-30 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 117.44 E-value: 6.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLS-------------SITNA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 79 WTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTaqSMNTSLMLTLG 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 159 LMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL----SPKLTLLTFYTYITMTSTMFLMIKLLETNK--ISTMMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 233 SWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-296 |
2.76e-27 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 111.45 E-value: 2.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------------LSSITNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 79 WTLGQWSITQMSnnISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM----MTAQSMNTSLM 154
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFGGLSEDWQ 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY--TYITMTSTMFLMIKLLETN-K 226
Cdd:PRK05777 271 QVLAIIAIAsmlVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVISLLRRKgG 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 227 ISTMMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK05777 351 EAESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
1.51e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 106.63 E-value: 1.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 23 SNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNISCTI---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 98 -------LTTALAIKLGLAPFHFWLPEVLQGA-TTTTALILTTWQKLAP-----MSLLMMTAQSMNTSLMLTLGLMSAAI 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 165 GGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL----SPKLTLLTFYTYITMTSTMFLMIKLLETNKIST-----MMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 236 KLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-296 |
4.85e-26 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 108.11 E-value: 4.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 14 IMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLIL--------LSSITNAWTLGQW 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLfgisliygFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 85 SITQMSNNISCTI----LTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM-------MTAQSMNTSL 153
Cdd:TIGR01770 192 LSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY--TYITMTSTMFLMIKLLETNK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKdew 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 227 ---ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-296 |
1.66e-25 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 106.00 E-value: 1.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 13 LIMGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNN 92
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 93 IS----------CTILTTALAIKLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAPMSLLMMTAQSMNT 151
Cdd:COG0651 196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLT----------KVGVYAILRVLTLLFGA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 152 S-------LMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYT--YITMTSTMFL--- 217
Cdd:COG0651 266 DpalflgtLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAgaLFHLlnHALAKALLFLaag 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 218 -MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:COG0651 346 aIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-296 |
9.63e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 101.25 E-value: 9.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 6 STIITVSLIMGPLLTISSNHWILAWTGLEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQW 84
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 85 SI----TQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNtsLMLTLGLM 160
Cdd:MTH00199 179 SIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLG---WMVTILTL-SPKLTLLTFYTYITMTSTMFLMIKLLETNK--ISTMMTSW 234
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLS 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1593549708 235 TKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:MTH00199 337 RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-312 |
1.11e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 77.98 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 15 MGPLLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAI---------EAAIKYFLTQATASMLIL-------------- 71
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLfgcalyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 72 -LSSITNAwTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLmmTAQSMN 150
Cdd:MTH00198 279 mLGTILSA-TLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVIT 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 151 TSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT--MTSTM--FLMIKLLETNK 226
Cdd:MTH00198 356 SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVtyLVSALasFTVICTLEEFG 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 227 IST-----------------MMTSWTKL----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTK----QHMPI---I 278
Cdd:MTH00198 436 TRTptsrqrdgsfgnynlvrRLVDLTILsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKiafsSSLSIyylV 515
|
330 340 350
....*....|....*....|....*....|....*.
gi 1593549708 279 ATTMALLSLLNLFFYLRI--SYYSTITLPPNSTNYP 312
Cdd:MTH00198 516 ALFAIICTCISAFYYIRIvaTIYFNFTRPLIKTKTP 551
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-316 |
2.07e-11 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 64.64 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 51 RAIEAAIKYFLTQATASMLIL---------------LSSITNAWtlgqwSITQMSNNISCTI----LTTALAIKLGLAPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygfswlyglsggeieLQEIVNGL-----INTQMYNSPGISIalifITVGIGFKLSLAPF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 112 HFWLPEVLQGATTTTALILTTWQKLAPmslLMMTAQSMNT----------SLMLTLGLMSAAIGGWGGLNQTQLRKIMAF 181
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAA---SALATRIFDIpfyfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAY 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 182 SSIAHLGW-MVTILTLSPKL---TLLTF-YTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLA 252
Cdd:CHL00049 311 SSIGQIGYvIIGIIVGDSNDgyaSMITYmLFYIFMNLGTFACIVLFGlrtgTDNIRDYAGLYTKDPFLALSLALCLLSLG 390
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1593549708 253 GLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQWR 316
Cdd:CHL00049 391 GIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGRNQEITPYVRNYR 454
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
38-268 |
2.16e-11 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 64.58 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAW-TLGQWSITQMSNNISCTILTT--------ALAIK 105
Cdd:TIGR01972 137 AMLIPmylLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELLNLPLPFGVQTwlflaffiAFAVK 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 106 LGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSL------LMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKI 178
Cdd:TIGR01972 217 VPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRL 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMV------TILTLSPKLTLLTFYTYITMtsTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTL 248
Cdd:TIGR01972 297 IAYSSISHMGFVLlgifsfNELGISGAVFQMISHGLITA--ALFLLVGVLYerahTRDIAKYGGLANKMPVLAAFFMLFA 374
|
250 260
....*....|....*....|
gi 1593549708 249 MSLAGLPPLTGFMPKWLIMQ 268
Cdd:TIGR01972 375 MASLGLPGTSGFVGEFLILL 394
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
38-267 |
3.33e-11 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 63.95 E-value: 3.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWS---ITQMSNNISCTI-------LTTALAI 104
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiAELAAAPLPLTAqlllflaFFIAFAV 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAP-----MSLLMMTAQSMN-TSLMLTLGLMSAAIGGW 167
Cdd:COG1008 222 KVPMFPFHTWLPDahveaptagsvLLAGVLL----------KMGGygllrFALPLFPEASAYfAPLLAALGVIGIIYGAL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 168 GGLNQTQLRKIMAFSSIAHLGWMVtiltlspkLTLLTFYTY------ITM------TSTMFLMIKLLE----TNKISTMM 231
Cdd:COG1008 292 VALAQTDLKRLIAYSSVSHMGFVL--------LGIFALNPLglqgavLQMvshgliTAALFLLVGVLYdrthTRDIADLG 363
|
250 260 270
....*....|....*....|....*....|....*.
gi 1593549708 232 TSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIM 267
Cdd:COG1008 364 GLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
34-298 |
3.54e-11 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 64.25 E-value: 3.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 34 EISTLS---IIPLIAKqhhpRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNN-ISCTILTTALAI----- 104
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGlINDTSTGFALIVflfll 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 -----KLGLAPFHFWLPE-----------VLQGATT-------TTALILTTWQKLAPMSLLMMTAQSMNTSLMLtLGLMS 161
Cdd:PRK08668 204 afgvaKAGIFPLHVWAPDayseapqsfsaVLSGQLSklgaygfLLVLYVLPGTKLFSEFGTYRGVPLFNYILAW-LGNIS 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 162 AAIGGWGGLNQTQLRKIMAFSSIAHLGW-MVTILTLSPKLTLLTFYTYIT---MTSTMFLMIKLL----ETNKISTMMTS 233
Cdd:PRK08668 283 IIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLGFAGGLFHVFNhalFKGLFFLIFAAViyrtGTTKISEMGGL 362
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1593549708 234 WTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK08668 363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-298 |
7.77e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 63.07 E-value: 7.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 33 LEISTLSIIPLIA-KQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLG------------QWSITQMSNNISCTILT 99
Cdd:PRK12667 142 LEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGtlnmadlsakirGLSFPLTGGLAGNPPLA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 100 TALA---------IKLGLAPFHFWLPEV-----------LQGATTTT--ALILTTWQKLAPMSLLMMTAQSMNTSLMLTL 157
Cdd:PRK12667 222 LGVAlalalwaftIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVgaYAIIRFLYTIFGISPSLIDFRAALSPILIIL 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 158 GLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT----------MTSTMFlmIKLLETNKI 227
Cdd:PRK12667 302 GAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVF--IHAAGTRDI 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 228 STMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK12667 380 DELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-314 |
1.98e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 61.82 E-value: 1.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 33 LEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNISCT--------ILTTALAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENptvvtafgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPE-----------VLQGATTTTALILttwqkLAPMSLLMMTAQSMNT----SLMLTLGLMSAAIGGWGG 169
Cdd:PRK08375 215 KAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYA-----LIRIYFTVFGGDFRFAlglgWLLAVLALLSMLVGSLAA 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 170 LNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYT--YITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLN 241
Cdd:PRK08375 290 LGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEvtygTRRLSELSGLGRRMPLTA 369
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 242 AMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISYYSTITLPPNSTNYPQQ 314
Cdd:PRK08375 370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQ 442
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
96-285 |
9.67e-10 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 60.06 E-value: 9.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 96 TILTTALAIKLGLA--------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS-----LMLTLGLMSA 162
Cdd:PRK12650 204 PGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITA 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 163 AIGGWGGLNQTQLRKIMAFSSIAHLGWMV-TILTLSP-KLTLLTFYT--YITMTSTMFLMIKLLE----TNKISTMMTSW 234
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVaTIGVGTPfALTAAVVHTlaHALFKSSLFMLIGVVDhqagTRDIRRLGSLW 363
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 235 TKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELtkQHMPIIATTMALL 285
Cdd:PRK12650 364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAF--LEAPGGNAGVVLL 412
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-263 |
1.10e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 59.29 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 50 PRAIEAAIKYFLTQATASMLILL-SSITNAWTLGQWSITQMSNNISCT---ILTTAL-------AIKLGLAPFHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslGLALALvfviagiAFKISAVPFHQWTPDV 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 119 LQGATTTTALILTTWQKLAPMSL---LMMTAQSMNTS----LMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMV 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 192 TILTLSPK--LTLLTFY--TYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK02504 317 IGLVAGTEagYASMVFYllAYLFMNLGAFACVILFSlrtgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-298 |
2.72e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.18 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 33 LEISTLSIIPLIAKQHH-PRAIEAAIKYFLTQATASMLILLSSitnAWTLGQWSITQMS-------------NNISCTIL 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmsenptvvAKIALALF 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 99 TTALAIKLGLAPFHFWLPEVlQGATTTTALILTTWQKLAPMSLLM-----MTAQSMNTS----LMLTLGLMSAAIGGWGG 169
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDA-YPAAPSSISAMLLVIKQAGLYALArvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 170 LNQTQLRKIMAFSSIAHLGWM-----VTILTL-SPKLT----------LLTFYTYITMTSTMFL----MIKLLETNKIST 229
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMAsygeialaggIYHIVNHALYKALLFLtagaVIYETGTRNLNE 385
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1593549708 230 MMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMqELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK08376 386 LGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFH 453
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
97-268 |
6.90e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 56.90 E-value: 6.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 97 ILTTALAIKLGLAPFHFWLPE-----------VLQGATTttalilttwqKLAPMSL-----LMMTAQSMNTSLMLtLGLM 160
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLT----------KVGVYAIirthtLLFPGGGLDTLLMV-VALL 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 161 SAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFYT--YITMTSTMFLMIKLLETNKISTMMTSWTK 236
Cdd:PRK12665 283 TMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVGLIERQAGSSSLRRLGG 362
|
170 180 190
....*....|....*....|....*....|....*.
gi 1593549708 237 L----PMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQ 268
Cdd:PRK12665 363 LakasPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
48-293 |
1.08e-08 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 56.31 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 48 HHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNIScTILTTALAIKLGLA------------PFHFWL 115
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAP-TILSSPLLTLILLLlllgafgksaqfPLHFWL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 116 PE-----------------VLQGATTTTalilttwqKLAPmsLLMMTAQSMntSLMLTLGLMSAAIGGWGGLNQTQLRKI 178
Cdd:COG1009 235 PDamegptpvsallhaatmVKAGVYLLA--------RLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRV 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMVTILTLS-PKLTLLTFYTYITMTSTMFLM----IKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAG 253
Cdd:COG1009 303 LAYSTVSQLGYMFLALGVGaYVAALFHLLTHAFFKALLFLGagsvIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAG 382
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1593549708 254 LPPLTGFMPKWLIMQE-LTKQHMPIIATTMALLSLLNLFFY 293
Cdd:COG1009 383 IPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFY 423
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
18-291 |
2.46e-07 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 52.24 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 18 LLTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYF---------------LTQATASMLILLSSITNAWTlg 82
Cdd:PRK06458 122 LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWT-- 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 83 qwSITQMSNNISCTILTTALAI-------KLGLAPFHFWLPE-----------VLQGAttttalilttwqkLAPMSLL-- 142
Cdd:PRK06458 200 --ELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGV-------------LLNVALYav 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 143 ----MMTAQSMNT----SLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYITMTS- 213
Cdd:PRK06458 265 lryyILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSl 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 214 -------TMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQElTKQHMPIIATTMALLS 286
Cdd:PRK06458 345 tksaiffASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTA-GLARGPLLIAILLLLL 423
|
....*
gi 1593549708 287 LLNLF 291
Cdd:PRK06458 424 LTLAF 428
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
38-266 |
6.84e-07 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 50.85 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 38 LSIIPL---IAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSI---TQMSNNISCTI-------LTTALAI 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLSTqllllapILVGFGI 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLL------MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 178 IMAFSSIAHLGWMVTILTLSPKLTLL-TFYTYIT---MTSTMFLMIKLL-------ETNKISTMMTSWTKLPMLNAMMML 246
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILaAVFQMIShglISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMIL 377
|
250 260
....*....|....*....|
gi 1593549708 247 TLMSLAGLPPLTGFMPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-278 |
1.05e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 49.95 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 33 LEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSIT--QMSNNISCTILTTALAIKLGLAP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 111 FHFWLPE-----------VLQGATTttalilttwqKLAPMSLLMMTAQSMNTSLMLTL-GLMSAAIGGWGGLNQTQLRKI 178
Cdd:PRK07234 203 SGLWLPLthseaeppvsaLLSGVVV----------KAGVFPLVRCALDVPGLDLIVRIfGVGTALLGVLFALLEKDLKRM 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 179 MAFSSIAHLGWMVtiltLSPKLTLLTFYTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLnammmLTLMSLAGL 254
Cdd:PRK07234 273 LAFSTISQLGFIL----AAPLVGGLYALAHGLVKSTLFLCAGALPsrnfTELISQMLGIGKWIPLT-----MASFSIAGF 343
|
250 260
....*....|....*....|....
gi 1593549708 255 PPLTGFMPKWLIMQELTKQHMPII 278
Cdd:PRK07234 344 PLLAGFVSKVLTLKNLLPWQAIAL 367
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
55-268 |
2.90e-06 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 48.94 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 55 AAIKYFLTQATASMLILLSSITNAWTLGQWS------ITQMSNNISCTILTTAL----AIKLGLAPFHFWLPEV-LQGAT 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 124 TTTALILTTWQKLAPMSLLMMTAQ------SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLS 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQlfpqtwSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 198 PKLTLL----TFYTYITMTSTMFLMIKLLET-------NKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLI 266
Cdd:PRK07363 318 TQLSLLgavaQMISHGLILALLFHLVGIVERkvgtrdlDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397
|
..
gi 1593549708 267 MQ 268
Cdd:PRK07363 398 FQ 399
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
19-270 |
4.88e-06 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 48.21 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 19 LTISSNHWILAWTGLEISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASM-----LILLSSIT-NAWTLGQWSITQMSNN 92
Cdd:PRK08676 117 FAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIfafigLIFLFSLTrQALGTGTLNWTELAAH 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 93 ----------ISCTILTTALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMTAQSMNT-------SLM 154
Cdd:PRK08676 197 asllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeqfsNVL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 155 LTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFYT--YITMTSTMFLMIKLLETNKISTM 230
Cdd:PRK08676 277 IGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHRQYRSDR 356
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1593549708 231 MTSWTKLPMLNAMMMLTLM----SLAGLPPLTGFMPKWLIMQEL 270
Cdd:PRK08676 357 FDRIFDVFRLQPVAAWGVIlgsaAIIGMPPFPLFLSKFFILLQL 400
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
110-288 |
8.06e-06 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 47.61 E-value: 8.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 110 PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSM--NTSLMLTLGLMSAA---IGGWGGLNQTQLRKIMAFSSI 184
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLFGGLtmlTGALLAVRQTDLKLILAYSTV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 185 AHLGWMVTILTLSPKLTLLTFYTYITMTS----TMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPP 256
Cdd:PRK12647 293 SALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372
|
170 180 190
....*....|....*....|....*....|..
gi 1593549708 257 LTGFMPKWLIMQELTkqHMPIIATTMALLSLL 288
Cdd:PRK12647 373 LFGFLAKELIYEALL--EAPLWSLILTVAAVL 402
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
97-263 |
1.49e-05 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 46.84 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 97 ILTTALAiKLGLAPFHFWLPEVLQGATtttalilttwqklaPMS--------------LLMMTAQSMNTS-----LMLTL 157
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAPT--------------PVSaylhaaamvkagiyLVARLAPGFADVpvwrpTVLVL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 158 GLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLtfyTYITMT-------STMFLMIKLLE----TNK 226
Cdd:PRK12644 274 GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAAL---AGLAMLlahalfkAALFLVVGIIDhstgTRD 350
|
170 180 190
....*....|....*....|....*....|....*..
gi 1593549708 227 ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPK 263
Cdd:PRK12644 351 IRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
154-296 |
2.24e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 45.88 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLLTFYTYIT----MTSTMFLMIKLLE----TN 225
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTT 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 226 KISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK12662 362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
34-298 |
2.39e-05 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 45.79 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 34 EISTLSIIPLIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWTLGQWSITQMSNNI-----SCTILTTALAIKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptSPVIYGGLLLLIFGL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 109 A------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS--------LMLTLGLMSAAIGGWGGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGLsyfpsaqgVLIALSVLAMVFGVVMALLQTD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 175 LRKIMAFSSIAHLGWMVTILTLSPKLT----LLTFYTYITMTSTMFLMIKLLE----TNKISTMMTSWTKLPMLNAMMML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLGAGIVSyrtkTSNLRKLGGLLPVMPVVAFMVLC 369
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1593549708 247 TLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRISY 298
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
|
|
| 2a6301s01 |
TIGR00940 |
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ... |
13-275 |
3.60e-05 |
|
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273353 [Multi-domain] Cd Length: 793 Bit Score: 45.61 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 13 LIMGPLL-TISSNHWILAWTGLEISTLSIIPLIAKQHH-PRAIEAAIKYFLTQATASM-----LILLSSITNAWTLgQWS 85
Cdd:TIGR00940 114 AFMGAMLgVVLSDNLILLYVFWELTSIVSFLLISYWHHrAHSRYGAQKSLTITVFGGLamlggLILLGKITGSFSI-DAV 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 86 ITQMSNNISCTILTTALAIKLGLA-------PFHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTAQSMNTS-----L 153
Cdd:TIGR00940 193 IASADAIRNSPLFGTAMVLVLLGAftksaqfPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTeawfwI 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 154 MLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFLMIKLLE--TNKISTM 230
Cdd:TIGR00940 273 VGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLgSPSYHYQGDDSKIYALAAVAAVFHLINhaTFKGSLF 352
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1593549708 231 MTS------------------WTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHM 275
Cdd:TIGR00940 353 MAAgiidhetgtrdirklgglFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFAEAITAHL 415
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
38-267 |
4.98e-05 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 44.81 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 38 LSIIP---LIAKQHHPRAIEAAIKYFLTQATASMLILLSSITNAWT----LGQWSITQ-MSNNISCTILT-------TAL 102
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPGVQYwlflaffIAF 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 103 AIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAP-----MSLLMMTAQSMN-TSLMLTLGLMSAAIGGWGGLNQTQL 175
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAhVQAPTAGSVLLAGILLKMGAygllrFSLPLFPDASHEfAPIIITLGVIAIIYGALVALAQTDI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 176 RKIMAFSSIAHLGWmVTILTLSpkLTLL-----TFYtyitM------TSTMFLMIKLLETNKISTMMTS----WTKLPML 240
Cdd:PRK05846 302 KKLIAYSSISHMGF-VTLGIFA--GNQLgiqgaIFQ----MishglsSAALFLLVGVLYDRLHTRDIADygglAKVMPVL 374
|
250 260
....*....|....*....|....*..
gi 1593549708 241 NAMMMLTLMSLAGLPPLTGFMPKWLIM 267
Cdd:PRK05846 375 AAFFLFFAMASLGLPGTSGFVGEFLIL 401
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
111-305 |
5.76e-05 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 44.68 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 111 FHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMTA-----QSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIA 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplfeqAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 186 HLGWMVTILTLSPKLTLL------TFYTYITMTSTMFLMIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTG 259
Cdd:MTH00020 309 QLGYMVVACGLSHYSISLfhlmnhAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTG 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1593549708 260 FMPKWLIMQELTKQHMPIIATTMALLS-LLNLFFYLRISYYSTITLP 305
Cdd:MTH00020 389 FYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNT 435
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
140-296 |
6.24e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 44.55 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 140 SLLMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL--TFYTYITM--TSTM 215
Cdd:PRK07691 264 TLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIgaIYYLIHDMivKAAL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 216 FL----MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLF 291
Cdd:PRK07691 344 FLligiMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLY 423
|
....*
gi 1593549708 292 FYLRI 296
Cdd:PRK07691 424 SVIKI 428
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
101-265 |
6.91e-05 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 44.53 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 101 ALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMT-------AQSMNTSLmLTLGLMSAAIGGWGGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPAV-IAMGIVGIVYGSFATCRQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 173 TQLRKIMAFSSIAHLGwMVTILTLSPKLTLLTFYTYITM-----TSTMFLMIKLLETNKISTMMTSWTKL----PMLNAM 243
Cdd:MTH00226 318 IDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgivSSLLFILVTILYDRHHTRLIKYYRGLsitmPIWGTI 396
|
170 180
....*....|....*....|..
gi 1593549708 244 MMLTLMSLAGLPPLTGFMPKWL 265
Cdd:MTH00226 397 MIVTSLANVAVPPSGNFIGEYL 418
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-340 |
7.04e-05 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 39.93 E-value: 7.04e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 291 FFYLRISYYSTITLPPNSTNYPQQWRHKTNQKRY-LAPMTALATSMLPITP 340
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
105-268 |
7.78e-05 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 44.56 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 105 KLGLapfHFWLPEVLQGATTTTALILTTWQKLAPMSLLMMT----AQSMNTSLMLTL-GLMSAAIGGWGGLNQTQLRKIM 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVI 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 180 AFSSIAHLGWMVTILTL--SPKLTLLTFYTYITMTSTMFL----MIKLLETNK--ISTMMTSWTKLPMLNAMMMLTLMSL 251
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsVIHSTTVDEqdMRKMGGLIHSIPFTYTMMLIGSFSI 397
|
170
....*....|....*..
gi 1593549708 252 AGLPPLTGFMPKWLIMQ 268
Cdd:MTH00032 398 MGLPYLTGFYSKDLILE 414
|
|
| ND5 |
MTH00209 |
NADH dehydrogenase subunit 5; Provisional |
143-300 |
1.10e-04 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 43.87 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 143 MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFL---- 217
Cdd:MTH00209 231 SLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLnQPELAFFHLITHALFKALLFIcagn 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 218 MI-KLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSL-LNLFFYLR 295
Cdd:MTH00209 311 IIhSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMR 390
|
....*
gi 1593549708 296 ISYYS 300
Cdd:MTH00209 391 LSYFS 395
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
55-270 |
2.47e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 42.80 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 55 AAIKYF-LTQATAS----MLILLSSITNAWTLGQWSITQMSNNISCTILTTALAIKLGLAPFHFWLPEVLQGATTTTALI 129
Cdd:PRK08667 163 AGIFYFvMTQLSTVflmlGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 130 LT-TWQKLAPMSLL-----MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLG--------WMVTILT 195
Cdd:PRK08667 243 MSgVMLKVAVYGLVrflmdVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 196 LSPKLTLLTF-------YTYITMTSTMFL----MIKLLETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKW 264
Cdd:PRK08667 323 GLDTLALLALggalfhsLNHALFKSLLFLtagsVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402
|
....*.
gi 1593549708 265 LIMQEL 270
Cdd:PRK08667 403 LLYESF 408
|
|
| ND5 |
MTH00210 |
NADH dehydrogenase subunit 5; Provisional |
148-303 |
4.60e-04 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 41.92 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 148 SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTLL------TFYTYITMTSTMFLMIKL 221
Cdd:MTH00210 272 PLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLfhlmnhAFFKALLFLSAGSVIHAV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 222 LETNKISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS-LLNLFFYLRISYYS 300
Cdd:MTH00210 352 SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSaLLTAFYSIRLIYLT 431
|
...
gi 1593549708 301 TIT 303
Cdd:MTH00210 432 FIT 434
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
157-296 |
6.66e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 41.47 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 157 LGLMSAA---IGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLTL--LTFY---TYITMTSTMFL---MIKLLETN 225
Cdd:PRK12663 275 LATMAAItmvIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngAIFYlvhDMVVKTALFLIagsLVRLTGYR 354
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1593549708 226 KISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFYLRI 296
Cdd:PRK12663 355 SLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
27-286 |
7.40e-04 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 41.29 E-value: 7.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 27 ILAWTGLEIstLSIIPLIAKQHhPRAIEAAIKYFLTQATASMLILLSSitnAWTLGQ--WSITQM-----SNNISCTILT 99
Cdd:MTH00207 114 LLGWDGLGL--VSFILVIYYQN-PKSLGAGMITALTNRIGDVMLLLSI---GWTLNQghWSITNMwqtdmNNYIALSIMI 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 100 TALAiKLGLAPFHFWLPEVLQGATTTTALILTTWQKLAPMSLLM-----MTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQ 174
Cdd:MTH00207 188 AAMT-KSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIrfypfLSSTYWFNPALLLTASLTMLMAGLSAMTECD 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 175 LRKIMAFSSIAHLGWMVTILTLS-PKLTLLTFYTYITMTSTMFL----MIKL-LETNKISTMMTSWTKLPMLNAMMMLTL 248
Cdd:MTH00207 267 MKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVcagsLIHShHHSQDLRTMGNLTNQMPLTTSCLLIAN 346
|
250 260 270
....*....|....*....|....*....|....*...
gi 1593549708 249 MSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLS 286
Cdd:MTH00207 347 LALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLA 384
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
110-272 |
1.46e-03 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 40.51 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 110 PFHFWLPEVLQGATTTTALILTTWQKLAPMSLL-----MMTAQSMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSI 184
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 185 AHLGWMVTI------LTLSPKLTLLTFYTYITMTSTMFLMIKLL----------------ETNKISTMMTSWTKLPMLNA 242
Cdd:PRK12646 308 SQLGMIMAMvgigggYAQHQQDAIASIYVFVLFAALFHLMNHAIfkcalfmgvgiidheaGTRDIRILSGMRQLFPKMNL 387
|
170 180 190
....*....|....*....|....*....|
gi 1593549708 243 MMMLTLMSLAGLPPLTGFMPKWLIMQELTK 272
Cdd:PRK12646 388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
|
|
| ND5 |
MTH00151 |
NADH dehydrogenase subunit 5; Provisional |
148-301 |
1.57e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 40.21 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 148 SMNTSLMLTLGLMSAAIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTL-SPKLTLLTFYTYITMTSTMFL---MIKLLE 223
Cdd:MTH00151 237 SGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLgMPSLALFHLYTHALFKALLFLcagSIIHSS 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 224 TNK--ISTMMTSWTKLPMLNAMMMLTLMSLAGLPPLTGFMPKWLIMQELTKQHMPIIATTMALLSLLNLFFY-LRISYYS 300
Cdd:MTH00151 317 SGTqdIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYsARLSFCL 396
|
.
gi 1593549708 301 T 301
Cdd:MTH00151 397 V 397
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
101-255 |
6.07e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 38.49 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 101 ALAIKLGLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSL------LMMTAQSMNTSLMLTLGLMSAAIGGWGGLNQT 173
Cdd:MTH00217 215 SLAIKIPKIPFHIWLPQAhVEAPVAGSVILAGVLLKLGGYGFirfswpLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQV 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 174 QLRKIMAFSSIAHLGwMVTILTLSPKLTLLTFYTYITM-----TSTMFLMIKLL----ETNKISTMMTSWTKLPMLNAMM 244
Cdd:MTH00217 295 DLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLMLahglvSSALFIAVTFLyerhHTRLIKYYRGMVITMPLFGILM 373
|
170
....*....|.
gi 1593549708 245 MLTLMSLAGLP 255
Cdd:MTH00217 374 LLLVLANASIP 384
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
107-272 |
8.75e-03 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 37.88 E-value: 8.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 107 GLAPFHFWLPEV-LQGATTTTALILTTWQKLAPMSLLMMTAQSMNTSL-----MLTLGLMSAAIGGWGGLNQTQLRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549708 181 FSSIAHLG--------WMVTILTLSPKLTLLTF-------YTYITMTSTMFLMIKLL----ETNKISTMMTSWTKLPMLN 241
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354
|
170 180 190
....*....|....*....|....*....|.
gi 1593549708 242 AMMMLTLMSLAGLPPLTGFMPKWLIMQELTK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
|
|
| |
