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Conserved domains on  [gi|1812094814|ref|YP_009730014|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Tagasta indica]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.25e-144

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 419.17  E-value: 2.25e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSMFIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  81 DLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 161 FSLVMGGLFIPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 241 LGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 321 VYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1812094814 401 YSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGEYFIF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.25e-144

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 419.17  E-value: 2.25e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSMFIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  81 DLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 161 FSLVMGGLFIPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 241 LGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 321 VYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1812094814 401 YSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGEYFIF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 9.74e-52

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 181.43  E-value: 9.74e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSMfiYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASW--NEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGYqPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGL---FIPLLN---DFGSFYFMFYLFIIlAFLVSMPMFMFH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdIAELAAaplPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 202 LWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVmkVITYLGFGMNYF---LMVFGLFGGVIVSLICFRQVDLSSLIAYSS 278
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFPEASAYFaplLAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 279 VSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASP 358
Cdd:COG1008   308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1812094814 359 PSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:COG1008   388 GTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 3.19e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 168.96  E-value: 3.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSMfiYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGyQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLF-IPLLND----FGSFYFMFYLFIIlAFLVSMPMFMFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 203 WLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMkvITYLGFGMNYF---LMVFGLFGGVIVSLICFRQVDLSSLIAYSSV 279
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFN--LPLFPDASLYFapvLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 280 SHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPP 359
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1812094814 360 SLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 8.20e-46

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 160.56  E-value: 8.20e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 106 SMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPLL------NDFGSF 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 180 YFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 260 VSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLS-NIVYERLGSRSLLVNKGLIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1812094814 339 LMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.25e-144

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 419.17  E-value: 2.25e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSMFIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  81 DLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 161 FSLVMGGLFIPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITY 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 241 LGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 321 VYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1812094814 401 YSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGEYFIF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-442 1.36e-108

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 327.18  E-value: 1.36e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  47 MISYFLGFDCYSFFLILLSFWICSLMLTSSMFIYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLIL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 127 ILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGG---LFIPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSsfmLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 204 LPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 284 LVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1812094814 364 LGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGEYF 442
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 1.89e-107

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 325.16  E-value: 1.89e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWWFIQSLMFMV---SFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSM 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTFSTLLllsLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  78 FIYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 158 LFKFSLVMGGLFIPLLN-DFGSFYF--MFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSSmEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 235 MKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 315 FCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1812094814 395 TLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 49-440 2.18e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 317.52  E-value: 2.18e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  49 SYFLGFDCYSFFLILLSFWICSLMLTSS--MFIYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLIL 126
Cdd:MTH00124   53 TQWLGIDQISAPLLVLSCWLLPLMILASqnHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLIL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 127 ILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPLLNDFGSF------YFMFYLFIILAFLVSMPMFMF 200
Cdd:MTH00124  133 ITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 201 HLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVS 280
Cdd:MTH00124  213 HLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVS 292

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 281 HMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPS 360
Cdd:MTH00124  293 HMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPT 372

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 361 LNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGE 440
Cdd:MTH00124  373 INLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-440 4.61e-102

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 311.85  E-value: 4.61e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLF---VLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYF-YADFNMISYFLGFDCYSFFLILLSFWICSLMLTSS 76
Cdd:MTH00068    1 MLKIIIptlMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLpSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  77 MFIYDLS--NYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPL 154
Cdd:MTH00068   81 QNHLKNEpiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 155 LVVLFKFSLVMGGLFIPLLNDFGSFYFM------FYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGG 228
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 229 YGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHG 308
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 309 LCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLS 388
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1812094814 389 FFSAVYTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGE 440
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPE 452
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 8-444 1.14e-100

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 307.68  E-value: 1.14e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   8 LIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFY-FYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSMFIYDLSNYS 86
Cdd:MTH00205    8 SLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSnSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNKNS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  87 RFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMG 166
Cdd:MTH00205   88 KLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 167 GLFIPLLNDFGSFYFMFYLFII---LAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGF 243
Cdd:MTH00205  168 SLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNS 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 244 GMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYE 323
Cdd:MTH00205  248 NFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYE 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 324 RLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYSYSQ 403
Cdd:MTH00205  328 RTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQ 407

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1812094814 404 HGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGEYFIF 444
Cdd:MTH00205  408 HGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 5-437 2.99e-99

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 304.59  E-value: 2.99e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   5 LFVLIFMTPLSLFYGFWWFIQSLMFMVSfIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTSSmfIYDLSN 84
Cdd:MTH00044   11 IAITSWIVPKNKLWPISISQSSLISLLS-LFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLAS--INHLSN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  85 YS----RFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFK 160
Cdd:MTH00044   88 NSpnnqRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIA 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 161 FSLVMGGLFIPLLN------DFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRV 234
Cdd:MTH00044  168 IYSSSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 235 MKV-ITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSG 313
Cdd:MTH00044  248 INLfSLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSA 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 314 LFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAV 393
Cdd:MTH00044  328 LFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAI 407

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1812094814 394 YTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFL 437
Cdd:MTH00044  408 YSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIII 451
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 1.01e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 292.95  E-value: 1.01e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYL---FVLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYFYADfNMISYFLGF--DCYSFFLILLSFWICSLMLTS 75
Cdd:MTH00110    1 MLKIIiptIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPND-NSLNFSLLFfsDSLSTPLLILTTWLLPLMLMA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  76 SMfiYDLSNYS----RFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVAS 151
Cdd:MTH00110   80 SQ--HHLSKEPltrkKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 152 LPLLVVLFKFSLVMGGLFIPL-------LNDFGSFYFMfYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLL 224
Cdd:MTH00110  158 LPLLVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLL-WLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 225 KLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLM 304
Cdd:MTH00110  237 KLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALM 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 305 LGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILL 384
Cdd:MTH00110  317 IAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILM 396

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1812094814 385 ILLSFFSAVYTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFL 437
Cdd:MTH00110  397 GLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 7.35e-90

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 279.90  E-value: 7.35e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   5 LFVLIFMTPLSLFYGFWWFIQSLMFMVSFIFMLGFYFYADFNMIS--YFLGFDCYSFFLILLSFWICSLMLTSSMFIYDL 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  83 S--NYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFK 160
Cdd:MTH00206   86 EpiNRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 161 FSLVMGGLFIPLL---NDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 238 ITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 318 SNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1812094814 398 MYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLK 438
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-440 9.22e-85

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 267.21  E-value: 9.22e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWWF-----IQSLMFMVSFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTS 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  76 SM--FIYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLP 153
Cdd:MTH00127   81 SQnhTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 154 LLVVLFKFSLVMGGLFIPLLNDFGSFYFMFYLFII------LAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLwwagclLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 228 GYGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 308 GLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1812094814 388 SFFSAVYTLYMYSYSQHGKYYSGGYNYSLGYFREYHLLIMHWLPLNLLFLKGE 440
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 9.74e-52

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 181.43  E-value: 9.74e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSMfiYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASW--NEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGYqPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGL---FIPLLN---DFGSFYFMFYLFIIlAFLVSMPMFMFH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdIAELAAaplPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 202 LWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVmkVITYLGFGMNYF---LMVFGLFGGVIVSLICFRQVDLSSLIAYSS 278
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRF--ALPLFPEASAYFaplLAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 279 VSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASP 358
Cdd:COG1008   308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1812094814 359 PSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:COG1008   388 GTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-399 2.79e-48

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 172.31  E-value: 2.79e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSMFiyDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWE--EIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGYqPERLQAGVYLIFYTLVASLPLLVVLFkfslvmgGLFIPLLNDFGSF---------------YFMFYLFIIlAFL 192
Cdd:PRK05846  152 GVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAFFI-AFA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 193 VSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFG-MNYFLMVFGLFGGVIVSLICFRQVDLS 271
Cdd:PRK05846  223 VKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHeFAPIIITLGVIAIIYGALVALAQTDIK 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 272 SLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLS 351
Cdd:PRK05846  303 KLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFA 382

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1812094814 352 SSMMASPPSLNLLGEFSLLISIISwSYFMFILLILLSF-FSAVYTLYMY 399
Cdd:PRK05846  383 MASLGLPGTSGFVGEFLILLGSFQ-VNPVIAFIATTGLiLAAVYSLWLY 430
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 3.19e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 168.96  E-value: 3.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSMfiYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGyQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLF-IPLLND----FGSFYFMFYLFIIlAFLVSMPMFMFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 203 WLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMkvITYLGFGMNYF---LMVFGLFGGVIVSLICFRQVDLSSLIAYSSV 279
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFN--LPLFPDASLYFapvLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 280 SHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPP 359
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1812094814 360 SLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 98-399 1.34e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 167.55  E-value: 1.34e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  98 IMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGL-FIPLLNDF 176
Cdd:MTH00204  123 VLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIK 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 177 GSFYFMFYLFI--ILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVItyLGFGMNYFLMVFGL 254
Cdd:MTH00204  203 LPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPL--FPAASEYFAPLIVM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 255 FGGVIV---SLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLL 331
Cdd:MTH00204  281 LSVIAViygSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIK 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1812094814 332 VNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:MTH00204  361 YYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 8.20e-46

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 160.56  E-value: 8.20e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 106 SMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPLL------NDFGSF 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 180 YFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 260 VSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLS-NIVYERLGSRSLLVNKGLIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1812094814 339 LMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 98-399 1.27e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 159.45  E-value: 1.27e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  98 IMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGG----LFIPLL 173
Cdd:MTH00217  120 ILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTtdyqALCCLK 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 174 NDFGSFYFMFYLFIiLAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVItyLGFGMNYF---LM 250
Cdd:MTH00217  200 IEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPL--LPEASEYFsplIQ 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 251 VFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSL 330
Cdd:MTH00217  277 TLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLI 356

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1812094814 331 LVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:MTH00217  357 KYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 59-397 1.42e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 148.92  E-value: 1.42e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  59 FFLILLSFWI-CSLMLTSSMFIYdlsnYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERL 137
Cdd:MTH00226  106 YFIILTGFIVpCSILISWHSVKY----LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKM 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 138 QAGVYLIFYTLVASLPLLVVLFKFSLVMGGL-FIPLLNDF----GSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAP 212
Cdd:MTH00226  182 QAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTdYLTLASCShvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAP 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 213 ISGSMVLAGVLLKLGGYGIFRVMKVITYLGF-GMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMS 291
Cdd:MTH00226  262 VAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVT 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 292 MNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLI 371
Cdd:MTH00226  342 HDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSIL 421

                         330       340
                  ....*....|....*....|....*.
gi 1812094814 372 SIISWSYFMFILLILLSFFSAVYTLY 397
Cdd:MTH00226  422 SSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 31-419 6.14e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 145.05  E-value: 6.14e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  31 VSFIFMLGFYFYADFNMISYFLGFDCYS-----FFLILLSFWICSLMLTSSMFIYDLSNYSRFFVFVVLFLLIMLCCSFS 105
Cdd:MTH00094    1 LSLLFFFSPFLFFLFLMFFSFLMFNNYSwsglfFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 106 SMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPLLNDFGSFYFMfyl 185
Cdd:MTH00094   81 SSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFIL--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 186 fiILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKvitYLGFGMNYFLMVFGLFGGVIVSLICF 265
Cdd:MTH00094  158 --SLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILG---SLNFVYNNFWIIFSLLGMILSSFCCV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 266 RQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSL 345
Cdd:MTH00094  233 FQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGL 312

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1812094814 346 WWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMYSYSQHGKYYSGGYNYSLGYF 419
Cdd:MTH00094  313 IFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLS 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-341 1.60e-31

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 125.91  E-value: 1.60e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSFWICSLMLTSSmfiYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:PRK12561   51 LEWSLGVDGLSMPLVLLSGLITTLSIFAS---WKVTRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLI 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGYQpERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPL----LNDF-GSFYFMFYLFIILAFLVSMPMFMFHL 202
Cdd:PRK12561  128 SIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHT 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 203 WLPSAHVEAPISGSMVLAGVLLKLGGYGIFRV-MKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSH 281
Cdd:PRK12561  207 WLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSH 286

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 282 MSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMP 341
Cdd:PRK12561  287 MGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
ndhD CHL00011
NADH dehydrogenase subunit 4
 103-343 4.45e-26

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 110.42  E-value: 4.45e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 103 SFSSMSLMMFYIFFEGSLIPTLILILGWGYQpERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGlfIPLLNDFGSFY-- 180
Cdd:CHL00011  128 LFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSN--EPTLNFETLANqs 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 181 ------FMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRV-MKVITYLGFGMNYFLMVFG 253
Cdd:CHL00011  205 ypvaleILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVG 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 254 LFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVN 333
Cdd:CHL00011  285 AIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 364

                         250
                  ....*....|
gi 1812094814 334 KGLINLMPSM 343
Cdd:CHL00011  365 GGIAIPMPKI 374
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 100-403 1.05e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 108.31  E-value: 1.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 100 LCCSFSSMSLMMFYIFFEGSLIPTLILILGWGYqPERLQAGVYLIFYTLVASLPLLVVLFKF-----SLVMGGLFIPLLN 174
Cdd:COG0651   120 MNGAFLTGDLFNLFVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLygatgTLNMADLAARLAE 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 175 DFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFG--MNYFLMVF 252
Cdd:COG0651   199 LDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPAlfLGTLLLVL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 253 GLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLV 332
Cdd:COG0651   279 GLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDK 358

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1812094814 333 NKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISII-SWSYFMFILLILLSFFSAVYTLYMYSYSQ 403
Cdd:COG0651   359 LGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALeAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 104-324 5.50e-23

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 101.32  E-value: 5.50e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 104 FSSMSLMMFYIFFEGSLIPTLILILGWGYQpERLQAGVYLIFYTLVASLPLLVVlfkfSLVMG--------GLFIPLLND 175
Cdd:PRK02546  132 FAVQDMLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLA----ALAMAfygdtptfDMTALAAKD 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 176 FG-SFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRvMKViTYLGFGMNYF---LMV 251
Cdd:PRK02546  207 FGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLR-MNA-GMLPDAHAQFaplLIV 284

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1812094814 252 FGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYER 324
Cdd:PRK02546  285 LGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDR 357
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 5.84e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 100.93  E-value: 5.84e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSfwicSLMLTSSMFIYDLS-NYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLIL 126
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLN----SLLTLIAIYSSDESiQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLL 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 127 ILGWGYQpERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGG---LFIPLLNDFGSFYFMFYLF--IILAFLVSMPMFMFH 201
Cdd:PRK06473  147 IAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGAssfDYEPLRSHTLPLSTQLLLLapILVGFGIKIPLVPFH 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 202 LWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRvmkvitylgFGMNYF----------LMVFGLFGGVIVSLICFRQVDLS 271
Cdd:PRK06473  226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLR---------FGVGLFpeawvylapwLATWAVVSVLYGASCAIAQKDMK 296

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812094814 272 SLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLIN 338
Cdd:PRK06473  297 KMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 20-393 5.87e-19

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 88.44  E-value: 5.87e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  20 FWWFIQSLMFMVSFIFMLGFYFYADFNMISYFLG--------FDCYSFFLILLSFWICSLMLtsSMFIYDLSNYSRFFVF 91
Cdd:MTH00062    1 FYFFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNnvfnglfiFDSLSFYLILLVLFLGLYSQ--VMFYNLLSGVSRFFLF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  92 VVLFLLIMlccSFSSMSLMMFYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIP 171
Cdd:MTH00062   79 LSLIFSIL---CFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 172 LLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFgmnYFLMV 251
Cdd:MTH00062  156 DWGSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLF 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 252 FGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLL 331
Cdd:MTH00062  233 LCCLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWV 312

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1812094814 332 VNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAV 393
Cdd:MTH00062  313 LLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFFGGLV 374
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-338 2.52e-18

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 87.07  E-value: 2.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  48 ISYFLGFDCYSFFLILLSfwiCSLMLTSSMFIYDLSNYSRFFVFVVLFLLIMLCCSFSSMSLMMFYIFFEGSLIPTLILI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 128 LGWGYQpERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLF-----IPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHL 202
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 203 WLPSAHVEAPISGSMVLAGVLLKLGGYGIFRvmkvitylgFGMNYF----------LMVFGLFGGVIVSLICFRQVDLSS 272
Cdd:PRK07363  227 WLPDAYTEASPAVAILLGGVLAKLGTYGLLR---------FGLQLFpqtwslvapgLAIIGTISVIYGALSAIAQKDIKR 297

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1812094814 273 LIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLIN 338
Cdd:PRK07363  298 MVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMN 363
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 112-401 9.77e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 82.23  E-value: 9.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 112 FYIFFEGSLIPTLILIlGWGYQPERLQAG-VYLIFYTLVASLPLLVVLFKFSLVmGGLFIPLLND---FGSFYFMFYLFI 187
Cdd:PRK08375  131 LFVFLEIMSLSSYALV-AMGGDRRALAAArKYLIVGLIGSTFLLIGVGLLYGVT-GTLNMADLAGalaENPTVVTAFGFV 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 188 ILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGF----GMNYFLMVFGLFGGVIVSLI 263
Cdd:PRK08375  209 LLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFrfalGLGWLLAVLALLSMLVGSLA 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 264 CFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSM 343
Cdd:PRK08375  289 ALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLT 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1812094814 344 SLWWFLLSSSMMASPPSLNLLGEFSLLISIIS-WSYFMFILLILLSFFSAVYTLYMYSY 401
Cdd:PRK08375  369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEaGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-392 3.10e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 80.74  E-value: 3.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 186 FIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVmKVITYLGFGMN---YFLMVFGLFGGVIVSL 262
Cdd:PRK06458  219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRY-YILIDAAIGSDfpgRLLLIFGLLSVLVAAF 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 263 ICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPS 342
Cdd:PRK06458  298 FLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPL 377

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1812094814 343 MSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSA 392
Cdd:PRK06458  378 TGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLA 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 181-345 1.07e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 72.70  E-value: 1.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 181 FMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYF-------LMVFG 253
Cdd:PRK12667  223 GVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFraalspiLIILG 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 254 LFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVN 333
Cdd:PRK12667  303 AVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDEL 382

                         170
                  ....*....|..
gi 1812094814 334 KGLINLMPSMSL 345
Cdd:PRK12667  383 AGLGRKMPIASF 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 103-341 8.95e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 70.03  E-value: 8.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 103 SFSSMSLMMFYIFFEGSLIPTLILILgWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLFIPLLNDF-----G 177
Cdd:PRK08668  114 VFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLindtsT 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 178 SFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGF-----------GMN 246
Cdd:PRK08668  193 GFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLFN 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 247 YFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLG 326
Cdd:PRK08668  273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTG 352

                         250
                  ....*....|....*
gi 1812094814 327 SRSLLVNKGLINLMP 341
Cdd:PRK08668  353 TTKISEMGGLIEKMP 367
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 178-399 2.70e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 68.24  E-value: 2.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 178 SFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNY--FLMVFGLF 255
Cdd:PRK08676  203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEQFsnVLIGLGIF 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 256 GGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKG 335
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFD 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1812094814 336 LINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILLSFFSAVYTLYMY 399
Cdd:PRK08676  363 VFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 19-393 1.05e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 63.60  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  19 GFWWFIQSLMFMVSFIFMLGFYFYADFNMISYFLGFD-------CYSFFLILLSFWICSLMLTSSMFIYDLSNYSRFFVF 91
Cdd:PRK08667   34 VLWLVIAIALLLFAGSLQLFTGNPLDIPLWGIAPGLDitfhidrLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  92 VVLFLLIMLCCSFSSMSLMM--FYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSLVMGGLF 169
Cdd:PRK08667  114 SALTALFILSMLGVVASANTfsFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFE 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 170 IPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFL 249
Cdd:PRK08667  194 LSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLI 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 250 MVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLML-----------GHGLCSSGLFCLS 318
Cdd:PRK08667  274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALlalggalfhslNHALFKSLLFLTA 353

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 319 NIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISII--------SWSYFMFILLILLSFF 390
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFqsfsvadpLIKILLFSVLAIFALT 433


                  ...
gi 1812094814 391 SAV 393
Cdd:PRK08667  434 SAL 436
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 187-350 1.70e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 59.58  E-value: 1.70e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 187 IILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVItylgFGMNYFLMVFGLFGGVIVSLICFR 266
Cdd:PRK07234  190 IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDV----PGLDLIVRIFGVGTALLGVLFALL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 267 QVDLSSLIAYSSVSHMSLVIVGLMsmnyWGCFgslvLMLGHGLCSSGLFCLSNIVYERLgsrsllvNKGLINLMPSMSLW 346
Cdd:PRK07234  266 EKDLKRMLAFSTISQLGFILAAPL----VGGL----YALAHGLVKSTLFLCAGALPSRN-------FTELISQMLGIGKW 330


                  ....
gi 1812094814 347 WFLL 350
Cdd:PRK07234  331 IPLT 334
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 197-341 4.09e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 55.66  E-value: 4.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 197 MFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVmkVITYLG---FGMNYFLMVFGLFGGVIVSLICFRQVDLSSL 273
Cdd:PRK06521  226 LVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISAVLGVLYALAEHDLKRL 303

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1812094814 274 IAYSSVSHMSLVIVGL-----MSMNYWGCFGSLVLM------LGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMP 341
Cdd:PRK06521  304 LAYSTIENIGIIFVGLglamvFIAYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMP 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 7.30e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 54.35  E-value: 7.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 185 LFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMkvitYLGFGMNYFL---------MVFGLF 255
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIV----YDVFKANFVFttlpfnnvfMILAAL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 256 GGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKG 335
Cdd:PRK12662  289 AIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLN 368

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1812094814 336 LINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLISIISWSYFMFILLILL-SFFSAVYT 395
Cdd:PRK12662  369 LWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVgSGLSVIYV 429
PRK12650 PRK12650
DUF4040 family protein;
188-341 4.38e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.35  E-value: 4.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 188 ILAFLVSMPMFM------FHLWLPSAHVEA-PIS-----GSMVLAGVLLKLGGYGIFRVMKVitylgfgMNYFLMVFGLF 255
Cdd:PRK12650  209 VVAVLIAVAAFTksaqfpFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMI 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 256 GGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKG 335
Cdd:PRK12650  282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361


                  ....*.
gi 1812094814 336 LINLMP 341
Cdd:PRK12650  362 LWRRMP 367
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 109-341 5.37e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 5.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 109 LMMFYIFFEGSLIPTLILILGWGYQPERLQAGV-YLIFYTLVASLPLLVVLFKF----SLVMGGLFIPLLNDFGSFYFMF 183
Cdd:PRK08376  143 LFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSMVLLGIALLYgqygTLNMAYLAVKMSENPTVVAKIA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 184 YLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLagVLLKLGG-YGIFRVMKVITYLGFGMN---YFLMVFG---LFG 256
Cdd:PRK08376  223 LALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVLFSIYGPAINLAtvgWVIIILGcltMFV 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 257 GVIVSLIcfrQVDLSSLIAYSSVSH---------MSLVIVGLMSMNYWGCF---GSLVLMLGHGLCSSGLFCLSNIVYER 324
Cdd:PRK08376  301 GVAMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYE 377

                         250
                  ....*....|....*..
gi 1812094814 325 LGSRSLLVNKGLINLMP 341
Cdd:PRK08376  378 TGTRNLNELGGLARTMP 394
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-87 2.15e-06

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 46.36  E-value: 2.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814   1 MLKYLFVLIFMTPLSLFYGFWW-----FIQSLMFMVSFIFMLGFYFYADFNMISYFLGFDCYSFFLILLSFWICSLMLTS 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWlwttsTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90
                  ....*....|..
gi 1812094814  76 SMFIYDLSNYSR 87
Cdd:pfam01059  81 SQKHLKSEPNNR 92
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-345 3.55e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 48.99  E-value: 3.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 187 IILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYL-GFG-MNYFLMVFGLFGGVIVSLIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNAnGWSsVLKLVIIMATLTVFFAELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 265 FRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMS 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371


                  .
gi 1812094814 345 L 345
Cdd:PRK08377  372 L 372
PRK12646 PRK12646
DUF4040 family protein;
84-407 2.06e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.06  E-value: 2.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  84 NYSRFFVFVVLFLLIMLCCSFSSMSLMMfYIFFEGSLIPTLILILGWGYQPERLQAGVYLIFYTLVASLPLLVVLFKFSL 163
Cdd:PRK12646  108 NLPRFYFYLTLFMFSMIGIVLSDNTILM-YVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYI 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 164 VMGGLFIPLL-------NDFGSFYFMFYLFIILAFLVSmPMFMFHLWLPSAhVEAPISGSMVL-AGVLLKLGGYGIFRVM 235
Cdd:PRK12646  187 MTGTNNITEIlgqadhiKNHGLFIPMIFMFLLGAFTKS-AQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFT 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 236 KVITYLGFGMnYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSH--MSLVIVGLMSMNYWG------------CFGSL 301
Cdd:PRK12646  265 PLLGLSNMYI-YIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgMIMAMVGIGGGYAQHqqdaiasiyvfvLFAAL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 302 VLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMASPPSLNLLGE---FSLLISIISWSY 378
Cdd:PRK12646  344 FHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKemfLDALTQTGQLSQ 423

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1812094814 379 FMFILLILL-------SFFSAVYTLYMYSYSQHGKY 407
Cdd:PRK12646  424 FSLISMIIIvfigviaSIFTFTYALYMVKEVFWGKY 459
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 201-345 8.36e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 8.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 201 HLWLPSAHVEAPISGSMVLAGVLLKLGGYGIFRVMKVITYLGFGMNYFLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVS 280
Cdd:PRK08042  200 HGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLE 279

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1812094814 281 HMSLVIVGL------MSMNY-----WGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSL 345
Cdd:PRK08042  280 NIGIILLGLgagvtgIALEQpaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-396 1.10e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.34  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814  58 SFFLILLSF-WICSLMLTS-SMFIYDLSNYSRFFVFVVLFLLIMLCCSFSSmSLMMFYIFFEGSLIPTLILIlGWGYQPE 135
Cdd:PRK06589   86 LIFLLLIGFlWICALLYTPkYLAINNIDSSSRFLFFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLI-GHTRNNI 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 136 RLQAGVY----LIFYTLVASLPLLVVLFK----FSLVMGGLFipllndfgSFYFMFYLFIILAFLVS-MPMFMFHLWLPS 206
Cdd:PRK06589  164 SLSGGYKylkiLMISALLLFLPAVILIYTktgnLDFVSGGLF--------SKNQSIILLLMFIYGIAkTAIFPVHSWLPA 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 207 AHVEAPISGSMVLAGVLLKLggyGIFRVMKVITYLgFGMNYFLMVFGLFGGVI---------VSLICFRQVDLSSLIAYS 277
Cdd:PRK06589  236 AMVAHYPVSALLHAVIVVKT---GLFCIYKILLYI-FGLSYLQRIFAEFNWLIfipivsifySSLKALKTDNIKKILAYS 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 278 SVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSSGLFCLSNIVYERLGSRSLLVNKGLINLMPSMSLWWFLLSSSMMAS 357
Cdd:PRK06589  312 TISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGI 391

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1812094814 358 PPSLNLLGEFSLLISI-----ISWSYFMFILLILLSFFSAVYTL 396
Cdd:PRK06589  392 PIFSGFISKFLILLAAseqnqPWLSIIVMLVVIASSILSALYLL 435
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 168-396 2.91e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 39.63  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 168 LFIPLLNDFGSFYFMFYLFIILAFLVSMPMFMFHLWLPSAHVEAPISGSMVLAgVLLKLGGYGIFrvmkvityLGFGMNY 247
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLGIFSIL--------VSIGLNV 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094814 248 -FLMVFGLFGGVIVSLICFRQVDLSSLIAYSSVSHMSLVIVGLMSMNYWGCFGSLVLMLGHGLCSsglFCLSNIVYERLG 326
Cdd:MTH00196  153 nILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMS---ICVFSIILALNV 229

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1812094814 327 SRSLLVN-KGLINLMPSMSLWWFLLSSSMMASPPSLNLLGEFSLLIS-IISWSYFMFILLILLSFFSAVYTL 396
Cdd:MTH00196  230 YKNLIIEfSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSgVVYQYYLIFLLAVFCSVIAGVYYV 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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