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Conserved domains on  [gi|1824661657|ref|YP_009734783|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Tetrix ruyuanensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.95e-31

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 107.17  E-value: 1.95e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   3 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1824661657  83 TSSIKFWWISTSAFIIILLVGIYYEWNQGMLKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.95e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 107.17  E-value: 1.95e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   3 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1824661657  83 TSSIKFWWISTSAFIIILLVGIYYEWNQGMLKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.80e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 78.62  E-value: 1.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1824661657 112 MLK 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 4.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 73.23  E-value: 4.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW-FGLIEMLVFIAILLVGLIYAWKKG 113


                  ....
gi 1824661657 112 MLKW 115
Cdd:COG0838   114 ALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.95e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 107.17  E-value: 1.95e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   3 MMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1824661657  83 TSSIKFWWISTSAFIIILLVGIYYEWNQGMLKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 6.53e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 101.09  E-value: 6.53e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWA 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-117 4.50e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 93.77  E-value: 4.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWAT 117
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 7.43e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 93.13  E-value: 7.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILPMIMMMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 3.87e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 83.88  E-value: 3.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILPMIMMMLSMMISKKTIsDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWA 116
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 1.47e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 82.24  E-value: 1.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00113    4 ISMLTISLALSTIL-----TTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWA 116
Cdd:MTH00113   79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 1.08e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 79.94  E-value: 1.08e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00203    5 MLFFLIALLLSLIL-----LFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1824661657  81 MKTSSIKFWWISTsaFIIILLVGIYYEWNQGMLKW 115
Cdd:MTH00203   80 NQLSSLSLLLAFL--FLILLTLGLIYEWLQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.74e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 79.58  E-value: 1.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00136    5 TTILTITIALSLIL-----AIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824661657  81 MKTSSIKFWWISTSAFIIILLVGIYYEWNQGMLKWA 116
Cdd:MTH00136   80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWA 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.80e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 78.62  E-value: 1.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1824661657 112 MLK 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-116 1.82e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 76.96  E-value: 1.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILpmimmMLSMMISKKTISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPL--I 78
Cdd:MTH00069    3 MLMLLISTILSLIL-----ITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwA 77

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1824661657  79 PIMKTSSIKFWWistSAFIIILL-VGIYYEWNQGMLKWA 116
Cdd:MTH00069   78 SQLNTPTNTLFW---STLILILLtLGLIYEWIQGGLEWA 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 6.82e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 75.36  E-value: 6.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  34 EKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWISTSAFIIILLVGIYYEWNQGML 113
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                  ...
gi 1824661657 114 KWA 116
Cdd:MTH00106  112 EWT 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 4.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 73.23  E-value: 4.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:COG0838    35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW-FGLIEMLVFIAILLVGLIYAWKKG 113


                  ....
gi 1824661657 112 MLKW 115
Cdd:COG0838   114 ALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-116 1.23e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 72.20  E-value: 1.23e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSiKFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:PRK06602   38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIG-WLGFVEAMIFILVLLVGLVYLWRKG 116


                  ....*
gi 1824661657 112 MLKWA 116
Cdd:PRK06602  117 ALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 1.78e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 61.62  E-value: 1.78e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWIsTSAFIIILLVGIYYEWNQG 111
Cdd:MTH00018   30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWT-MVGFLFILTLGLIYEWIKG 108


                  ....
gi 1824661657 112 MLKW 115
Cdd:MTH00018  109 GLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 1.83e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 61.65  E-value: 1.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWIsTSAFIIILLVGIYYEWNQG 111
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWV-MYLFLIILTIGLIYEWVKG 113


                  ....
gi 1824661657 112 MLKW 115
Cdd:MTH00055  114 GLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 29-115 2.41e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 58.79  E-value: 2.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  29 TISDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIKFWWIsTSAFIIILLVGIYYEW 108
Cdd:MTH00030   37 TKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWI-VYTFLIVLAIGLAYEW 115


                  ....*..
gi 1824661657 109 NQGMLKW 115
Cdd:MTH00030  116 IKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.87e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 45.89  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQG 111
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGL-FALIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 1824661657 112 MLKW 115
Cdd:PRK07756  118 VLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 2.16e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 45.75  E-value: 2.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  34 EKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQGML 113
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-SAFIEALIFVLILIVGLVYAWRKGAL 117


                  ..
gi 1824661657 114 KW 115
Cdd:CHL00022  118 EW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
35-115 4.10e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 42.73  E-value: 4.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  35 KSSPFECGFNPKTHARlPFSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWNQGMLK 114
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGL-FGLIEMLLFIVLLTIGFIYAWKKGALE 124


                  .
gi 1824661657 115 W 115
Cdd:PRK08489  125 W 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 9.63e-06

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 41.58  E-value: 9.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  32 DREKSSPFECGFNPKTHARLP--FSIQFFLISMLFLIFDVEIALIIPLIPIMKTSSIkFWWISTSAFIIILLVGIYYEWN 109
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGV-FGLVEMALFMLTVFVAYAYVWR 112


                  ....*.
gi 1824661657 110 QGMLKW 115
Cdd:PRK07928  113 RGGLEW 118
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 31-115 5.40e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 37.10  E-value: 5.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657  31 SDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPIMKT-SSIKFwwISTSAFIIILLVGIYYEWN 109
Cdd:PRK06432   59 SDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRlGLIPF--IETLIFLAMPLFAVYYAFK 136


                  ....*.
gi 1824661657 110 QGMLKW 115
Cdd:PRK06432  137 MGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 3.12e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.48  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661657   1 MSMMTITFLISLILPMIMMMLSMMISKKTiSDREKSSPFECGFNPKTHARLPFSIQFFLISMLFLIFDVEIALIIPLIPI 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1824661657  81 MKTSSIKFWWIstsafIIILLVGIYYEWNQGMLKW 115
Cdd:MTH00092   80 DFSSLISFFML-----MIFIFFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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