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Conserved domains on  [gi|1824665801|ref|YP_009740680|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Ergatettix dorsifera]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 6.45e-82

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 251.67  E-value: 6.45e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   1 MKKAPMKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLASTTLIMSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  79 KLHNQhKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSsAIIGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILS-AIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 159 IMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAM 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 239 SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWS-KNNYFSKNKIMFML 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNlKKKKNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824665801 318 NMMSTLGLLLSPIII 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 6.45e-82

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 251.67  E-value: 6.45e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   1 MKKAPMKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLASTTLIMSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  79 KLHNQhKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSsAIIGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILS-AIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 159 IMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAM 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 239 SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWS-KNNYFSKNKIMFML 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNlKKKKNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824665801 318 NMMSTLGLLLSPIII 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 1.37e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 92.76  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  24 SNSWLGVWMGLEMNLMSFIPLI---SNQMSYGNSSIKYFITQTLASTTLI------------MSFITLMMKLHNQHKEIV 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgywGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtLSFDELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  89 YMMMTISILM----KMGAAPVHFWFPEVMEYLDWKNCILL-MTWQKIAPMILI--------SYIKINQLFMTFIIMSsAI 155
Cdd:pfam00361  81 LLLLFLLILVgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIIS-ML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 156 IGAIMGLNQISLRLILSYSSINHMAWMLASI----QVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINE--IFINKNNH 229
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665801 230 KMNKLNSA---MSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISS 278
Cdd:pfam00361 240 KTMPILALvflVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-331 9.39e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 77.68  E-value: 9.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  11 YMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGNS---SIKYFITQTLASTTL------------IMSFIT 75
Cdd:TIGR01770 108 LLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSteaGLKYFILGAFSSGLLlfgisliygftgSLNFED 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  76 LMMKLHNQHKEIVYMMMTI-----SILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIA---------PMILISYIKI 141
Cdd:TIGR01770 188 LLLFLSNGMLNISLLLLGIvlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEA 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 142 NQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWM----WYFMIYSLLTT---AISWEFKSS 214
Cdd:TIGR01770 268 WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLgafGVLSLLRSY 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 215 KVNFINEIFINKNNHKMNKLNSAM---SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKmfLS 291
Cdd:TIGR01770 348 KDEWIEYISDFAGLFKTNPILAILiliFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR--VV 425

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1824665801 292 AGILMFKENKWSKNNYFSKNK---IMFMLNMMSTLGLLLSPII 331
Cdd:TIGR01770 426 KVMYFDKPERRIPSNPQSKAQsllLSISALFILFLGLFPSLIL 468
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-293 6.75e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 72.07  E-value: 6.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  10 FYMILVMSTV---ISITSNSWLGVWMGLEMNLMSFIPLISnqMSYGN-----SSIKYFITQTLASTTLI--MSF------ 73
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLVA--FRRDDrrsseAALKYFLLGALSSGFLLygISLlygatg 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  74 ------ITLMMKLHNQHKEIVYM---MMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILI-------- 136
Cdd:COG1007   182 slnlagIAAALAAGGANSPLLLLglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 137 -SYIKINQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVN-------MMMwmwYFMIYSLLTTAI- 207
Cdd:COG1007   262 pGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvsaALF---YLLAYLFMNLGAf 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 208 -------SWEFKSSKVNFINEIFinknnHKMNKLNSAMSFM--SLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISS 278
Cdd:COG1007   339 avilllsRKGGEAEEIEDLAGLA-----RRSPLLALAMTIFllSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNS 413

                         330
                  ....*....|....*....
gi 1824665801 279 TITLYFYMK----MFLSAG 293
Cdd:COG1007   414 VISAYYYLRvvkaMYFDEP 432
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 6.45e-82

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 251.67  E-value: 6.45e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   1 MKKAPMKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLASTTLIMSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSseSSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  79 KLHNQhKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSsAIIGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILS-AIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 159 IMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAM 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 239 SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWS-KNNYFSKNKIMFML 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNlKKKKNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824665801 318 NMMSTLGLLLSPIII 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-332 1.06e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 181.94  E-value: 1.06e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   7 KIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMS--YGNSSIKYFITQTLASTTLIMSFITLMM-----K 79
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHprATEAATKYFLTQAAASALILFSSTTNAWntgqwD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  80 LHNQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYI--KINQLFMTFIIMSSAIIG 157
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsnSLNPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 158 AIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSA 237
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 238 MSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILM-----FKENKWSKNNyfSKNK 312
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLppnttNMMMKWRTKP--KKNT 323

                         330       340
                  ....*....|....*....|
gi 1824665801 313 IMFMLNMMSTLGLLLSPIII 332
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMIL 343
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-328 1.08e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 176.23  E-value: 1.08e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   2 KKAPMKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLASTTLIMSFITLMMK 79
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSEseSVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  80 LHNQhkeIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYI-KINQLFMTFIIMS--SAII 156
Cdd:MTH00144   81 SFSW---FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFlDLYWLAYLLCVISvlSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 157 GAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFiNKNNHKMNKLNS 236
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGLSI 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 237 AMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNyfSKNKIMFM 316
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSK--VLNSSIIS 314

                         330
                  ....*....|..
gi 1824665801 317 LNMMSTLGLLLS 328
Cdd:MTH00144  315 LNLLGGLLFLLL 326
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-332 2.50e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 173.49  E-value: 2.50e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   8 IMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLASTTLIMSFIT--------LM 77
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSteAATKYFLTQATASMLLMMAIIInlmysgqwTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  78 MKLHNQhkeIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYI--KINQLFMTFIIMSSAI 155
Cdd:MTH00105   87 TKLTNP---TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIspSINPNLLLTLAILSIL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 156 IGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLN 235
Cdd:MTH00105  164 IGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 236 SAMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSK-NNYFSKNKIM 314
Cdd:MTH00105  244 ILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKmKWQFENTKPM 323

                         330       340
                  ....*....|....*....|.
gi 1824665801 315 FM---LNMMSTLGLLLSPIII 332
Cdd:MTH00105  324 TLlptLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-332 1.89e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 168.61  E-value: 1.89e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   6 MKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMS--YGNSSIKYFITQTLASTTLIMSFITLMM----- 78
Cdd:MTH00200    5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHprKVEATTKYFIIQATASALLLFGGLLNAWtsgqw 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  79 KLHNQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILIS--YIKINQLFMTFIIMSSAII 156
Cdd:MTH00200   85 GISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 157 GAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNS 236
Cdd:MTH00200  165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 237 AMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNY---FSKNKI 313
Cdd:MTH00200  245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWrtkSNSNLL 324

                         330
                  ....*....|....*....
gi 1824665801 314 MFMLNMMSTLGLLLSPIII 332
Cdd:MTH00200  325 VGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-332 1.93e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 160.48  E-value: 1.93e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   8 IMFYMI-LVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGN--SSIKYFITQTLAST-----TLIMSFITLMMK 79
Cdd:MTH00041    6 LIFLITsIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSveATIKYFLVQAFSAAillngALIQAWLSGSWS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  80 LHNQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYI--KINQLFMTFIIMSSAIIG 157
Cdd:MTH00041   86 INGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsnLLNSNILILCGILSVLVG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 158 AIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSA 237
Cdd:MTH00041  166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 238 MSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNYFSKNKIMF-- 315
Cdd:MTH00041  246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVyg 325

                         330       340
                  ....*....|....*....|.
gi 1824665801 316 ----MLNMMSTLGLLLSPIII 332
Cdd:MTH00041  326 vilsILSSISILGLLLIPLFL 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 12-332 2.57e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 160.36  E-value: 2.57e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  12 MILVMS----TVISITSNSWLGVWMGLEMNLMSFIPLISNQMS--YGNSSIKYFITQTLASTTLIMS-----FITLMMKL 80
Cdd:MTH00135    7 TILLFSlglgTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHprAVEATTKYFLTQATAAAMILFAsttnaWLTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  81 HNQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIK-INQLFMTFIIMSSAIIGAI 159
Cdd:MTH00135   87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIApTNPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 160 MGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAMS 239
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 240 FMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNYFSKNKIMFM--- 316
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpla 326

                         330
                  ....*....|....*..
gi 1824665801 317 LNMMSTLGLL-LSPIII 332
Cdd:MTH00135  327 ISTTATLMLLpLTPAIL 343
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-332 3.40e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 159.45  E-value: 3.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   9 MFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISN--QMSYGNSSIKYFITQTLASTTLIMSfiTLMMKLHNQHKE 86
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQnkSITENEGAMKYFLFQEFGSALLLMG--GSLSFSNLYLSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  87 IVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSSAIIGAIMGLNQIS 166
Cdd:MTH00197   80 LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 167 LRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAMSFMSLGGL 246
Cdd:MTH00197  160 IRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 247 PPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSagILMFKENKWSKNNYFSKNKIMFMLNMMSTLGLL 326
Cdd:MTH00197  240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK--SLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317


                  ....*.
gi 1824665801 327 LSPIII 332
Cdd:MTH00197  318 MIFTMI 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 9-330 1.57e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 158.16  E-value: 1.57e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   9 MFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQM--SYGNSSIKYFITQTLAS-----TTLIMSFITLMMKLH 81
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHhpRATEAATKYFLTQASASalilfSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  82 NQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYI--KINQLFMTFIIMSSAIIGAI 159
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 160 MGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAMS 239
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 240 FMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNYFSKNKIMFMLNM 319
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|.
gi 1824665801 320 MSTLGLLLSPI 330
Cdd:MTH00070  328 TIILSLMLLPI 338
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-329 1.09e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.71  E-value: 1.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   1 MKKAPMKIMFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLI--SNQMSYGNSSIKYFITQTLASTTLIMSfITLMM 78
Cdd:MTH00011    2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMtsSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  79 KLHNQHKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAP-MILISYIKINQL-FMTFIIMSSAII 156
Cdd:MTH00011   81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPlSILFFFTSHNILpMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 157 GAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNS 236
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 237 AMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNYFSKNKImfm 316
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKI--- 317

                         330
                  ....*....|...
gi 1824665801 317 LNMMSTLGLLLSP 329
Cdd:MTH00011  318 LISMCTLSLGLIP 330
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-288 1.88e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.25  E-value: 1.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  13 ILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGNS---SIKYFITQTLAS------------TTLIMSFITLM 77
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaeaGLKYFVLGALSSglflfgcallcgTTGGLHLSYIN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  78 MKLHNQHK------EIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIM 151
Cdd:MTH00196   81 LVLNSGQSfssvsvPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 152 SSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVN-------MMMWMWYFMIYSLLTTAISWEFKSSKvNFINEIFI 224
Cdd:MTH00196  161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfesiqaSLVYLFIYIIMSICVFSIILALNVYK-NLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824665801 225 NKNNHKMNKLNSAMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKM 288
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 1.37e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 92.76  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  24 SNSWLGVWMGLEMNLMSFIPLI---SNQMSYGNSSIKYFITQTLASTTLI------------MSFITLMMKLHNQHKEIV 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgywGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtLSFDELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  89 YMMMTISILM----KMGAAPVHFWFPEVMEYLDWKNCILL-MTWQKIAPMILI--------SYIKINQLFMTFIIMSsAI 155
Cdd:pfam00361  81 LLLLFLLILVgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIIS-ML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 156 IGAIMGLNQISLRLILSYSSINHMAWMLASI----QVNMMMWMWYFMIYSLLTTAISWEFKSSKVNFINE--IFINKNNH 229
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665801 230 KMNKLNSA---MSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISS 278
Cdd:pfam00361 240 KTMPILALvflVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-288 7.99e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 77.75  E-value: 7.99e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   8 IMFYMILVMSTVISITSNSWLGVWMGLEM-NLMSFIPL-ISNQMSYG-NSSIKYFITQTLASTtLIMSFITLMMKLHNQ- 83
Cdd:MTH00199  100 PILILIVALGSLLLVSSINWLSIYLAIELqTLTLFILVaLKRDSAYStEAGLKYFVLGAVSSG-LFLFGCALLYGLTGEt 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  84 ---------HKEIVYMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIApmilISYIKINQLFMTFIIMSSA 154
Cdd:MTH00199  179 siqginsilTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIG----VFSILVQIGPVTNVVLICA 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 155 II----GAIMGLNQISLRLILSYSSINHMAWML--------ASIQVNMMmWMWYFMIYSLLTTAISWEFKSSKvNFINEI 222
Cdd:MTH00199  255 VLsiiyGAIGALNQTKIKRLLAYSGIGHMGFILfgvaigsfESIQASLI-YMIIYVIMSICSFSIILSLKLTK-GLIVEV 332

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665801 223 FINKNNHKMNKLNSAMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKM 288
Cdd:MTH00199  333 SGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-331 9.39e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 77.68  E-value: 9.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  11 YMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLISNQMSYGNS---SIKYFITQTLASTTL------------IMSFIT 75
Cdd:TIGR01770 108 LLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSteaGLKYFILGAFSSGLLlfgisliygftgSLNFED 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  76 LMMKLHNQHKEIVYMMMTI-----SILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIA---------PMILISYIKI 141
Cdd:TIGR01770 188 LLLFLSNGMLNISLLLLGIvlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEA 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 142 NQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWM----WYFMIYSLLTT---AISWEFKSS 214
Cdd:TIGR01770 268 WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLgafGVLSLLRSY 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 215 KVNFINEIFINKNNHKMNKLNSAM---SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKmfLS 291
Cdd:TIGR01770 348 KDEWIEYISDFAGLFKTNPILAILiliFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR--VV 425

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1824665801 292 AGILMFKENKWSKNNYFSKNK---IMFMLNMMSTLGLLLSPII 331
Cdd:TIGR01770 426 KVMYFDKPERRIPSNPQSKAQsllLSISALFILFLGLFPSLIL 468
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 89-288 2.49e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.74  E-value: 2.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  89 YMMMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSSAIIGAIMGLNQISLR 168
Cdd:MTH00198  302 YLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 169 LILSYSSINHMAWMLASIQVNM---MMWMWYFMIYSLLTTAISW-------EFKS---------------SKVNFINEIF 223
Cdd:MTH00198  382 RLLAYSGIGHIGFILIGVSAGTyesLQASWTYAVTYLVSALASFtvictleEFGTrtptsrqrdgsfgnyNLVRRLVDLT 461

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1824665801 224 INKNNHKMNKLNSAMSFMSLGGLPPFLGFLPKWMLIQELMN-------NLMYTVAVTLIISSTITLYFYMKM 288
Cdd:MTH00198  462 ILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKiafssslSIYYLVALFAIICTCISAFYYIRI 533
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-293 6.75e-14

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 72.07  E-value: 6.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  10 FYMILVMSTV---ISITSNSWLGVWMGLEMNLMSFIPLISnqMSYGN-----SSIKYFITQTLASTTLI--MSF------ 73
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLVA--FRRDDrrsseAALKYFLLGALSSGFLLygISLlygatg 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  74 ------ITLMMKLHNQHKEIVYM---MMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILI-------- 136
Cdd:COG1007   182 slnlagIAAALAAGGANSPLLLLglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 137 -SYIKINQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVN-------MMMwmwYFMIYSLLTTAI- 207
Cdd:COG1007   262 pGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvsaALF---YLLAYLFMNLGAf 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 208 -------SWEFKSSKVNFINEIFinknnHKMNKLNSAMSFM--SLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISS 278
Cdd:COG1007   339 avilllsRKGGEAEEIEDLAGLA-----RRSPLLALAMTIFllSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNS 413

                         330
                  ....*....|....*....
gi 1824665801 279 TITLYFYMK----MFLSAG 293
Cdd:COG1007   414 VISAYYYLRvvkaMYFDEP 432
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-300 9.03e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 71.78  E-value: 9.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  10 FYMILVMSTV---ISITSNSWLGVWMGLE-MNLMSFIpLISNQMSYGNSS---IKYFITQTLASTTLI--MSF------- 73
Cdd:PRK05777  105 FYLLVLFALLgmmVMVSANDLLTLFLGLElLSLPLYA-LAALRRDRRRSLeaaIKYFVLGALASGFLLygMSLlygatgs 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  74 -----ITLMMKLHNQHKEIVYM---MMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILI--------- 136
Cdd:PRK05777  184 lsfagIAKALADGSGNSLLLLFglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 137 SYIKINQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWML---ASIQVNMMMWMWYFMIYSLLTTAISWEFKS 213
Cdd:PRK05777  264 GLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglAAGTAEGYSAVLFYLLAYLFMTLGAFGVIS 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 214 --SKVNFINEIFinknnHKMNKLNS-------AMSFM--SLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITL 282
Cdd:PRK05777  344 llRRKGGEAESI-----SDFAGLSKrspllaaVMTIFmlSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418

                         330       340
                  ....*....|....*....|..
gi 1824665801 283 YFYMK----MFLSAGILMFKEN 300
Cdd:PRK05777  419 FYYLRviklMYFDEPPRDAPVN 440
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-293 7.23e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 69.02  E-value: 7.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801   9 MFYMILVMSTVISITSNSWLGVWMGLEMNLMSFIPLIsnqMSYGN-----SSIKYFITQTLASTTLIMSFITL------- 76
Cdd:COG0651   111 PLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV---ALGGTkealrAGLKYLILNLVGSALFLLGVGLLygatgtl 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  77 --------MMKLHNQHKEIVYMMMTISILMKMGAAPVHFWFPE-------------------VMEYldwkncILLMTWQK 129
Cdd:COG0651   188 nmadlaarLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsallsglltkVGVY------AILRVLTL 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 130 IAPMILISYIkinQLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVN---MMMWMWYFMIYS----- 201
Cdd:COG0651   262 LFGADPALFL---GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtplGLAGALFHLLNHalaka 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 202 ---LLTTAISWEFKSSKVNFINEIFinknnHKMNKLNSAM--SFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLII 276
Cdd:COG0651   339 llfLAAGAIERATGTRDLDKLGGLG-----KRMPLTAAAFliGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLL 413

                         330
                  ....*....|....*..
gi 1824665801 277 SSTITLYFYMKMFLSAG 293
Cdd:COG0651   414 SSLLTLAYFVRIFGRAQ 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 153-330 2.84e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.06  E-value: 2.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 153 SAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIY--------SLLTTAISWEFKSSKVNFINEIFI 224
Cdd:PRK12667  305 SAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGTRDIDELAG 384

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 225 NKNNHKMNKLNSAMSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSA--GILMFKENKW 302
Cdd:PRK12667  385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLffGKPKSGEEVE 464

                         170       180
                  ....*....|....*....|....*...
gi 1824665801 303 SKNNYFSKNKIMFMLNMMSTLGLLLSPI 330
Cdd:PRK12667  465 HKESPSMSVVILVLALAVLILGILALFL 492
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 91-317 3.37e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 47.94  E-value: 3.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  91 MMTISILMKMGAAPVHFWFPEVMEYLDWKNCILLMTWQKIAPMILISYIKINQLFMTFIIMSsaIIGAIMGLNQISLRLI 170
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGL--LICFFQMFLLKSYKNL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 171 LSYSSINHMAWMLASIQVNMMMWMWYFMIYSLLTTAISWEFKsskvnfineifiNKNNHKMNKLNSAMSFMSlggLPPFL 250
Cdd:MTH00091  140 LILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFN------------NVNKLNFVSWETLLVFMN---LPFSV 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1824665801 251 GFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSAGILMFKENKWSKNNYFSKNKIMFML 317
Cdd:MTH00091  205 TFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-286 3.93e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 3.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 144 LFMTFIIMSsAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMMMWMWYFMIYsLLTTAIsweFKSS---KVNFIN 220
Cdd:PRK08375  273 LLAVLALLS-MLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLH-LLHHAL---MKGAlflAAGAIE 347

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665801 221 EIFINKNNHKMNKLNSAMSFM---------SLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLyFYM 286
Cdd:PRK08375  348 VTYGTRRLSELSGLGRRMPLTaaafavaslSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL-LYF 421
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
238-292 2.17e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.10  E-value: 2.17e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1824665801 238 MSFMSLGGLPPFLGFLPKWMLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSA 292
Cdd:PRK12663  375 ILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-292 6.47e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 41.24  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801  54 SSIKYFITQTLAST--------------TLIMSFITLMMKLHNQHKEIVYMMMTI-SILMKMGAAPVHFWFPEVM-EYLD 117
Cdd:PRK08376  173 AGIKYMFVGSLASSmvllgiallygqygTLNMAYLAVKMSENPTVVAKIALALFIaGLAMKSGAVPVHMWLPDAYpAAPS 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 118 WKNCILLMTWQ----KIAPMILISY-IKINQLFMTFIIM----SSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQV 188
Cdd:PRK08376  253 SISAMLLVIKQaglyALARVLFSIYgPAINLATVGWVIIilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGV 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 189 NMMMWMWYFM-----------IYSLLTTAISWEFKSSKVNFINEIFINKNNHKMNKLNSAM-----SFM----SLGGLPP 248
Cdd:PRK08376  333 GLAALGDPAMasygeialaggIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMpkttiAFLigaaAIVGLPP 412

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1824665801 249 FLGFLPKWmLIQELMNNLMYTVAVTLIISSTITLYFYMKMFLSA 292
Cdd:PRK08376  413 FNGFASKW-LIYESSALFNPILGVIAMIGSVLTLASFVKVFHTA 455
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 143-290 3.90e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.98  E-value: 3.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 143 QLFMTFIIMSSAIIGAIMGLNQISLRLILSYSSINHMAWMLASIQVNMmmwmWYFMIYSLLTTAIsweFKSSkvnfineI 222
Cdd:COG1009   275 LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGA----YVAALFHLLTHAF---FKAL-------L 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665801 223 F-----INKNNH-----KMNKLNSAM---------SFMSLGGLPPFLGFLPKWMLIQELM--NNLMYTVAVTLIISSTIT 281
Cdd:COG1009   341 FlgagsVIHATGtrdirKMGGLRKKMpitaitfliGALSLAGIPPFAGFFSKEAILEAALeaGGLGPLLLAVALLGAFLT 420


                  ....*....
gi 1824665801 282 LYFYMKMFL 290
Cdd:COG1009   421 AFYSFRLFF 429
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 241-283 9.36e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.64  E-value: 9.36e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1824665801 241 MSLGGLPPFLGFLPKWMLIQ---ELMNNLMYTVAVTLIISSTITLY 283
Cdd:PRK12665  379 LNLGGIPPFSGFIGKVALLEagaEDGTWLAWALVAGGVVTSLLTLY 424
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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