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Conserved domains on  [gi|1841997199|ref|YP_009785034|]
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DNA methyltransferase [Mannheimia phage vB_MhM_1127AP1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RlmK super family cl34101
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ...
 51-119 1.52e-04

23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification


The actual alignment was detected with superfamily member COG1092:

Pssm-ID: 440709 [Multi-domain]  Cd Length: 392  Bit Score: 40.94  E-value: 1.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841997199  51 DVFHDFTDMPYENETFWHIVFDPPHLIKGGKNSW-LIKKYGKLpenwqevikkgFDECMRVLKPNGTLIF 119
Cdd:COG1092   274 DAFDWLRELAREGERFDLIILDPPAFAKSKKDLFdAQRDYKDL-----------NRLALKLLAPGGILVT 332
 
Name Accession Description Interval E-value
RlmK COG1092
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ...
 51-119 1.52e-04

23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 440709 [Multi-domain]  Cd Length: 392  Bit Score: 40.94  E-value: 1.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841997199  51 DVFHDFTDMPYENETFWHIVFDPPHLIKGGKNSW-LIKKYGKLpenwqevikkgFDECMRVLKPNGTLIF 119
Cdd:COG1092   274 DAFDWLRELAREGERFDLIILDPPAFAKSKKDLFdAQRDYKDL-----------NRLALKLLAPGGILVT 332
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
69-125 1.08e-03

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 38.16  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1841997199  69 IVFDPPHLIkgGKNswlikkYGKLPENWQEV-----IKKGFDECMRVLKPNGTLIFKwNETQ 125
Cdd:PRK11524   31 IFADPPYNI--GKN------FDGLIEAWKEDlfidwLYEWIDECHRVLKKQGTMYIM-NSTE 83
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 6-115 1.23e-03

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 36.39  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841997199   6 ILDACCG----SRMFHfNKHNPSVLFADNRE--IETTMKdgdKVRHLEVKPDVFH-DFTDMPYENETFWHIV-FDPPHLI 77
Cdd:pfam13649   1 VLDLGCGtgrlTLALA-RRGGARVTGVDLSPemLERARE---RAAEAGLNVEFVQgDAEDLPFPDGSFDLVVsSGVLHHL 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1841997199  78 kggknswlikkygklpenWQEVIKKGFDECMRVLKPNG 115
Cdd:pfam13649  77 ------------------PDPDLEAALREIARVLKPGG 96
 
Name Accession Description Interval E-value
RlmK COG1092
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ...
 51-119 1.52e-04

23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 440709 [Multi-domain]  Cd Length: 392  Bit Score: 40.94  E-value: 1.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841997199  51 DVFHDFTDMPYENETFWHIVFDPPHLIKGGKNSW-LIKKYGKLpenwqevikkgFDECMRVLKPNGTLIF 119
Cdd:COG1092   274 DAFDWLRELAREGERFDLIILDPPAFAKSKKDLFdAQRDYKDL-----------NRLALKLLAPGGILVT 332
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
69-125 1.08e-03

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 38.16  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1841997199  69 IVFDPPHLIkgGKNswlikkYGKLPENWQEV-----IKKGFDECMRVLKPNGTLIFKwNETQ 125
Cdd:PRK11524   31 IFADPPYNI--GKN------FDGLIEAWKEDlfidwLYEWIDECHRVLKKQGTMYIM-NSTE 83
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 6-115 1.23e-03

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 36.39  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841997199   6 ILDACCG----SRMFHfNKHNPSVLFADNRE--IETTMKdgdKVRHLEVKPDVFH-DFTDMPYENETFWHIV-FDPPHLI 77
Cdd:pfam13649   1 VLDLGCGtgrlTLALA-RRGGARVTGVDLSPemLERARE---RAAEAGLNVEFVQgDAEDLPFPDGSFDLVVsSGVLHHL 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1841997199  78 kggknswlikkygklpenWQEVIKKGFDECMRVLKPNG 115
Cdd:pfam13649  77 ------------------PDPDLEAALREIARVLKPGG 96
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
69-119 3.32e-03

DNA modification methylase [Replication, recombination and repair];


Pssm-ID: 440623  Cd Length: 236  Bit Score: 36.44  E-value: 3.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1841997199  69 IVFDPP-HLIKGGKNSWLIKKYGKLPENWQEVIKKGFDECMRVLKPNGTLIF 119
Cdd:COG0863    22 IVTDPPyNLGKKYGLGRREIGNELSFEEYLEFLREWLAECYRVLKPGGSLYV 73
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 55-119 6.84e-03

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 34.18  E-value: 6.84e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1841997199  55 DFTDMPYENETFWHIVfdpphlikggkNSWLIkkygklpENWQEViKKGFDECMRVLKPNGTLIF 119
Cdd:pfam08241  49 DAEDLPFPDNSFDLVL-----------SSEVL-------HHVEDP-ERALREIARVLKPGGILII 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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