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Conserved domains on  [gi|1842003990|ref|YP_009791381|]
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high light inducible protein [Synechococcus phage Bellamy]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LHCA5 super family cl47402
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 4-67 2.07e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


The actual alignment was detected with superfamily member COG5743:

Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 35.30  E-value: 2.07e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1842003990  4 TTNEFGQQNLFAKEPQmvvesynrkgLESPQ----QYAETYNGRWAMMGIVSGFISYAFTGNFFFGIF 67
Cdd:COG5743    2 SSTYRGRLNNFAVEPK----------DEEPRfgftPYAERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
 
Name Accession Description Interval E-value
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 4-67 2.07e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 35.30  E-value: 2.07e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1842003990  4 TTNEFGQQNLFAKEPQmvvesynrkgLESPQ----QYAETYNGRWAMMGIVSGFISYAFTGNFFFGIF 67
Cdd:COG5743    2 SSTYRGRLNNFAVEPK----------DEEPRfgftPYAERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
PHA02337 PHA02337
putative high light inducible protein
 37-67 2.24e-03

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 31.86  E-value: 2.24e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1842003990 37 AETYNGRWAMMGIVSGFISYAFTGNFFFGIF 67
Cdd:PHA02337   5 AEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
35-54 6.95e-03

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 32.66  E-value: 6.95e-03
                          10        20
                  ....*....|....*....|
gi 1842003990  35 QYAETYNGRWAMMGIVsGFI 54
Cdd:pfam00504  31 REAELKHGRWAMLAVL-GAL 49
 
Name Accession Description Interval E-value
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 4-67 2.07e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 35.30  E-value: 2.07e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1842003990  4 TTNEFGQQNLFAKEPQmvvesynrkgLESPQ----QYAETYNGRWAMMGIVSGFISYAFTGNFFFGIF 67
Cdd:COG5743    2 SSTYRGRLNNFAVEPK----------DEEPRfgftPYAERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
PHA02337 PHA02337
putative high light inducible protein
 37-67 2.24e-03

putative high light inducible protein


Pssm-ID: 177361 [Multi-domain]  Cd Length: 35  Bit Score: 31.86  E-value: 2.24e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1842003990 37 AETYNGRWAMMGIVSGFISYAFTGNFFFGIF 67
Cdd:PHA02337   5 AEIFNGWLAMIGFVAAVGAYATTGQIIPGIF 35
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
35-54 6.95e-03

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 32.66  E-value: 6.95e-03
                          10        20
                  ....*....|....*....|
gi 1842003990  35 QYAETYNGRWAMMGIVsGFI 54
Cdd:pfam00504  31 REAELKHGRWAMLAVL-GAL 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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