NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1842005215|ref|YP_009792435.1|]
View 

nucleotide kinase [Proteus phage PM 116]

Protein Classification

DUF3310 domain-containing protein( domain architecture ID 10570195)

DUF3310 domain-containing protein similar to Enterobacteria phage nucleotide kinase gp1.7 that catalyzes the phosphorylation of dGMP and dTMP to dGDP and dTDP

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3310 pfam11753
Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of ...
 28-88 6.31e-17

Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of unknown function.


:

Pssm-ID: 432050  Cd Length: 59  Bit Score: 68.09  E-value: 6.31e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1842005215  28 VKSPSHYqFFPDVEAIEIIASSMTQEGFHGYCMGNRLKYRLRAGNKDKLEqDIAKSDFYVE 88
Cdd:pfam11753   1 VNHPSHY-TKGDIEVIDVIEAQLTGEEFVGFCLGNAIKYVSRAGKKNGLE-DLKKAKWYLD 59
 
Name Accession Description Interval E-value
DUF3310 pfam11753
Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of ...
 28-88 6.31e-17

Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of unknown function.


Pssm-ID: 432050  Cd Length: 59  Bit Score: 68.09  E-value: 6.31e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1842005215  28 VKSPSHYqFFPDVEAIEIIASSMTQEGFHGYCMGNRLKYRLRAGNKDKLEqDIAKSDFYVE 88
Cdd:pfam11753   1 VNHPSHY-TKGDIEVIDVIEAQLTGEEFVGFCLGNAIKYVSRAGKKNGLE-DLKKAKWYLD 59
 
Name Accession Description Interval E-value
DUF3310 pfam11753
Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of ...
 28-88 6.31e-17

Protein of unknwon function (DUF3310); This is a family of conserved bacteriophage proteins of unknown function.


Pssm-ID: 432050  Cd Length: 59  Bit Score: 68.09  E-value: 6.31e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1842005215  28 VKSPSHYqFFPDVEAIEIIASSMTQEGFHGYCMGNRLKYRLRAGNKDKLEqDIAKSDFYVE 88
Cdd:pfam11753   1 VNHPSHY-TKGDIEVIDVIEAQLTGEEFVGFCLGNAIKYVSRAGKKNGLE-DLKKAKWYLD 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH