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Conserved domains on  [gi|1842020585|ref|YP_009807687|]
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glucosyltransferase [Gordonia phage Fryberger]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_tranf_2_3 super family cl38428
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 60-206 9.99e-05

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


The actual alignment was detected with superfamily member pfam13641:

Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 42.36  E-value: 9.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842020585  60 EWILVVEDDALPIDGFEDELAQVLSNSP-----SPVVSLYLGQSRPFSWQHGIGETiNMLEMQGDSSGWLLCqqmLHGVG 134
Cdd:pfam13641  89 DLVVLHDDDSVLHPGTLKKYVQYFDSPKvgavgTPVFSLNRSTMLSALGALEFALR-HLRMMSLRLALGVLP---LSGAG 164

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1842020585 135 IAIRTDLVTDMLTWAPMYHTLEgrpkpyDEAIGMWCRAMGLPIAYPFPSILDHDDTETLVAHVDKRKREVGT 206
Cdd:pfam13641 165 SAIRREVLKELGLFDPFFLLGD------DKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVYG 230
 
Name Accession Description Interval E-value
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 60-206 9.99e-05

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 42.36  E-value: 9.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842020585  60 EWILVVEDDALPIDGFEDELAQVLSNSP-----SPVVSLYLGQSRPFSWQHGIGETiNMLEMQGDSSGWLLCqqmLHGVG 134
Cdd:pfam13641  89 DLVVLHDDDSVLHPGTLKKYVQYFDSPKvgavgTPVFSLNRSTMLSALGALEFALR-HLRMMSLRLALGVLP---LSGAG 164

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1842020585 135 IAIRTDLVTDMLTWAPMYHTLEgrpkpyDEAIGMWCRAMGLPIAYPFPSILDHDDTETLVAHVDKRKREVGT 206
Cdd:pfam13641 165 SAIRREVLKELGLFDPFFLLGD------DKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVYG 230
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 40-85 5.34e-03

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 36.90  E-value: 5.34e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1842020585  40 NLGPGE-----NHWRAWVAAYDEDAEWILVVEDDALpidgFEDELAQVLSN 85
Cdd:COG3306    60 PLTPGEigcflSHRKAWQKIVESGLPYALILEDDVI----LSPDFAEVLEA 106
 
Name Accession Description Interval E-value
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 60-206 9.99e-05

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 42.36  E-value: 9.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842020585  60 EWILVVEDDALPIDGFEDELAQVLSNSP-----SPVVSLYLGQSRPFSWQHGIGETiNMLEMQGDSSGWLLCqqmLHGVG 134
Cdd:pfam13641  89 DLVVLHDDDSVLHPGTLKKYVQYFDSPKvgavgTPVFSLNRSTMLSALGALEFALR-HLRMMSLRLALGVLP---LSGAG 164

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1842020585 135 IAIRTDLVTDMLTWAPMYHTLEgrpkpyDEAIGMWCRAMGLPIAYPFPSILDHDDTETLVAHVDKRKREVGT 206
Cdd:pfam13641 165 SAIRREVLKELGLFDPFFLLGD------DKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVYG 230
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 40-85 5.34e-03

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 36.90  E-value: 5.34e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1842020585  40 NLGPGE-----NHWRAWVAAYDEDAEWILVVEDDALpidgFEDELAQVLSN 85
Cdd:COG3306    60 PLTPGEigcflSHRKAWQKIVESGLPYALILEDDVI----LSPDFAEVLEA 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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