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Conserved domains on  [gi|1864369143|ref|YP_009874506|]
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tail protein [Lactococcus phage phi145]

Protein Classification

carbohydrate binding domain-containing protein( domain architecture ID 140964)

carbohydrate binding domain-containing protein similar to Cellulomonas fimi endoglucanase CenC and Rhodothermus marinus xylanase

CATH:  2.60.120.260
Gene Ontology:  GO:0030246
PubMed:  19908036

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBM_4_9 super family cl19911
Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.
 255-318 3.64e-03

Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.


The actual alignment was detected with superfamily member pfam02018:

Pssm-ID: 418717  Cd Length: 134  Bit Score: 37.81  E-value: 3.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1864369143 255 VAVKPNTKYTFSFWAKGSGEHTV---------FAYKDWTSQGVQKINLTLDWTLYTWTVTSSNVIPAGNVQFF 318
Cdd:pfam02018  57 IRLEKGTTYTVSFWVKASSGPPQtvsvtlqitDASGNYDTVADEKVVLTGEWTKLEGTFTIPKTASTVELYVE 129
 
Name Accession Description Interval E-value
CBM_4_9 pfam02018
Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.
 255-318 3.64e-03

Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.


Pssm-ID: 396553  Cd Length: 134  Bit Score: 37.81  E-value: 3.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1864369143 255 VAVKPNTKYTFSFWAKGSGEHTV---------FAYKDWTSQGVQKINLTLDWTLYTWTVTSSNVIPAGNVQFF 318
Cdd:pfam02018  57 IRLEKGTTYTVSFWVKASSGPPQtvsvtlqitDASGNYDTVADEKVVLTGEWTKLEGTFTIPKTASTVELYVE 129
 
Name Accession Description Interval E-value
CBM_4_9 pfam02018
Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.
 255-318 3.64e-03

Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.


Pssm-ID: 396553  Cd Length: 134  Bit Score: 37.81  E-value: 3.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1864369143 255 VAVKPNTKYTFSFWAKGSGEHTV---------FAYKDWTSQGVQKINLTLDWTLYTWTVTSSNVIPAGNVQFF 318
Cdd:pfam02018  57 IRLEKGTTYTVSFWVKASSGPPQtvsvtlqitDASGNYDTVADEKVVLTGEWTKLEGTFTIPKTASTVELYVE 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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