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Conserved domains on  [gi|1980524912|ref|YP_009989166|]
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cytochrome b (mitochondrion) [Epacromius coerulipes]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  12 IKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  92 FICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 172 DNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCLLNPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQIMFWIMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1980524912 332 VVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  12 IKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  92 FICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 172 DNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCLLNPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQIMFWIMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1980524912 332 VVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 2.56e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.13  E-value: 2.56e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  12 IKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  92 FICIYLHVGRGMYYGSYMY---MNtWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGG 168
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 169 FAVDNATLNRFYTFH-FVLPFIIAAMATIHLFFLHQTGSNNPIG----MNSNIEKIPFHPYFTFKDSITFVIMTMLLITL 243
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 244 CLLNPymLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPI 321
Cdd:COG1290   259 AFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1980524912 322 NQIMFWIMVTVVCLLTWIGKRPveEPYIMTGQILTVIYFLYFL 364
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.59e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 3.59e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  10 PLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  90 MFFICIYLHVGRGMYYGSYM--YMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1980524912 168 GFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.62e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.83  E-value: 3.62e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  19 LIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  99 VGRGMYYGSYMYMN--TWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1980524912 177 NRFYTFHFVLPFIIAAMATIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-340 3.77e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 3.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 239 LLITLCLLNPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFY-NKTKFRGNQ 317
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|...
gi 1980524912 318 FYPINQIMFwIMVTVVCLltWIG 340
Cdd:TIGR01156 125 RRPVATTVF-LFGTVVAL--WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  12 IKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  92 FICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 172 DNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCLLNPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQIMFWIMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1980524912 332 VVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 626.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTNVHMAKMWDSLI 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 612.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   5 LRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  85 ANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 165 VWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLC 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 245 LLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1980524912 325 MFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFL 360
CYTB MTH00119
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 611.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILL 364
CYTB MTH00131
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 607.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   5 LRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  85 ANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 165 VWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLC 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 245 LLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1980524912 325 MFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00100
cytochrome b; Provisional
 4-372 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 604.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   4 PLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  84 HANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 164 WVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 244 CLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1980524912 324 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTNVHMAKM 372
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 602.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTNVHMAKMWDSLIKK 379
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 601.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTNVHMAKMWDSLIK 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 4-364 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 558.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   4 PLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  84 HANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 164 WVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 244 CLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1980524912 324 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 525.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFLTNVHMAKMWDSLIK 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-364 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 506.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   4 PLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  84 HANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 164 WVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 244 CLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1980524912 324 IMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFL 362
CYTB MTH00053
cytochrome b; Provisional
 1-364 4.27e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 497.31  E-value: 4.27e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912   1 MNKPLRLKHPLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  81 RTLHANGASMFFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTE 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 161 LVQWVWGGFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 241 ITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1980524912 321 INQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFL 364
CYTB MTH00033
cytochrome b; Provisional
 17-367 1.01e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 385.06  E-value: 1.01e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  17 NSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFFICIY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  97 LHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 177 NRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCLLN--PYMLGDP 254
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 255 DNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQIMFWIMVTVVC 334
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1980524912 335 LLTWIGKRPV-EEPYIMTGQILTVIYFLYFLTNV 367
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLV 366
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 2.56e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.13  E-value: 2.56e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  12 IKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  92 FICIYLHVGRGMYYGSYMY---MNtWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGG 168
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 169 FAVDNATLNRFYTFH-FVLPFIIAAMATIHLFFLHQTGSNNPIG----MNSNIEKIPFHPYFTFKDSITFVIMTMLLITL 243
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 244 CLLNPymLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPI 321
Cdd:COG1290   259 AFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1980524912 322 NQIMFWIMVTVVCLLTWIGKRPveEPYIMTGQILTVIYFLYFL 364
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
CYTB MTH00086
cytochrome b; Provisional
 13-364 2.08e-126

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 367.73  E-value: 2.08e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  13 KIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  93 ICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 173 NATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITfVIMTMLLITLCLLNPYMLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 253 DPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNktkFRGNQFYPINQIMFWIMVTV 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1980524912 333 VCLLTWIGKRPVEEPYIMTGQILTVIYFLYFL 364
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLIL 348
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.59e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 3.59e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  10 PLIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  90 MFFICIYLHVGRGMYYGSYM--YMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1980524912 168 GFAVDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 6.30e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 254.14  E-value: 6.30e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  11 LIKIINNSLIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASM 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  91 FFICIYLHVGRGMYYGSYMYMNTWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFA 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 171 VDNATLNRFYTFHFVLPFIIAAMATIHLFFLHQTGSNNPIGMNSNI-EKIPFHPYFTFKDSITFVIMTMLLITLCLLNPY 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 250 MLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSVSILMILPFYNKTKFrgnqFYPINQIMFWIM 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSV----YSVWRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*....
gi 1980524912 330 VTVVCLLTWIGKRPVEEPYIMTGQILTVI 358
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.62e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.83  E-value: 3.62e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  19 LIDLPAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  99 VGRGMYYGSYMYMN--TWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1980524912 177 NRFYTFHFVLPFIIAAMATIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 8.73e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 159.71  E-value: 8.73e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  89 SMFFICIYLHVGRGMYYGSYMYMN--TWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 167 GGFAVDNATLNRFYTFHF-VLPFIIAAMATIHLFFLHQTGSNNPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1980524912 246 LNPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 1.59e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.58  E-value: 1.59e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 208 NPIGMNSNIEKIPFHPYFTFKDSITFVIMTMLLITLCLLNPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1980524912 288 KLGGVIALFLSVSILMILPFYNKTKFRgNQFYPINQIMFWIMVTVVCLLTWIGKRPVEEPYIMTGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 5.62e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.23  E-value: 5.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFYNKTKFRGNQFYPINQIMFWIMVTVVCLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1980524912 339 IGKRPVEEPYIMTGQILTVIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 4.57e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 139.08  E-value: 4.57e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  23 PAPTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFFICIYLHVGRG 102
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 103 MYYGSYMYMN--TWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVDNATLNRFY 180
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1980524912 181 TFH-FVLPFIIAAMATIHLFFLHQTGSNNPI 210
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 9.97e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 121.75  E-value: 9.97e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912  25 PTNISFWWNFGSLLGLCLMIQIVTGLFLTMHYTPNIEMAFSSVVHICREVNNGWLIRTLHANGASMFFICIYLHVGRGMY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 105 YGSYMYMN--TWMIGTVILFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTELVQWVWGGFAVDNATLNRFYTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1980524912 183 H-FVLPFIIAAMATIHLFFLHQTGSNNPI 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 239-346 5.54e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 66.36  E-value: 5.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 239 LLITLCLLNPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFY-NKTKFRGNQ 317
Cdd:COG5679    51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPF 125

                          90       100       110
                  ....*....|....*....|....*....|
gi 1980524912 318 FYPINQIMFwIMVTVVCLLTWIGKR-PVEE 346
Cdd:COG5679   126 RRPVATAVF-LFGTLVTLWLGIGAAlPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 239-340 1.40e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.02  E-value: 1.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 239 LLITLCLLNPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFY-NKTKFRGNQ 317
Cdd:CHL00058   50 CNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|...
gi 1980524912 318 FYPINQIMFwIMVTVVCLLTWIG 340
Cdd:CHL00058  125 RRPVATTVF-LIGTAVALWLGIG 146
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-340 3.77e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 3.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524912 239 LLITLCLLNPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSVSILMILPFY-NKTKFRGNQ 317
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|...
gi 1980524912 318 FYPINQIMFwIMVTVVCLltWIG 340
Cdd:TIGR01156 125 RRPVATTVF-LFGTVVAL--WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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