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Conserved domains on  [gi|2026148843|ref|YP_010037898|]
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baseplate hub [Ralstonia phage phiRSP]

Protein Classification

COG5004 family protein( domain architecture ID 10009024)

COG5004 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
1-69 1.03e-24

P2-like prophage tail protein X [Mobilome: prophages, transposons];


:

Pssm-ID: 444028  Cd Length: 69  Bit Score: 86.85  E-value: 1.03e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2026148843  1 MTEYVTRDGDMADLIAFNYYGTRDGlVVEQLLDANPGLSGLGPLLPAGITIVLPDFTLPATQNAIHLWD 69
Cdd:COG5004    2 AMTYRTRQGDTLDALCWRYYGRTAG-VVEAVLAANPGLAALGPVLPAGTVVTLPDIPAAPTVETVRLWD 69
 
Name Accession Description Interval E-value
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
1-69 1.03e-24

P2-like prophage tail protein X [Mobilome: prophages, transposons];


Pssm-ID: 444028  Cd Length: 69  Bit Score: 86.85  E-value: 1.03e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2026148843  1 MTEYVTRDGDMADLIAFNYYGTRDGlVVEQLLDANPGLSGLGPLLPAGITIVLPDFTLPATQNAIHLWD 69
Cdd:COG5004    2 AMTYRTRQGDTLDALCWRYYGRTAG-VVEAVLAANPGLAALGPVLPAGTVVTLPDIPAAPTVETVRLWD 69
Phage_tail_X pfam05489
Phage Tail Protein X; This domain is found in a family of phage tail proteins. Visual analysis ...
 6-64 2.31e-14

Phage Tail Protein X; This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.


Pssm-ID: 283209  Cd Length: 60  Bit Score: 60.46  E-value: 2.31e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2026148843  6 TRDGDMADLIAFNYYGTRDGlVVEQLLDANPGLSGLGPLLPAGITIVLPDftLPATQNA 64
Cdd:pfam05489  5 ATQGDTVDALCWRYYGRTLG-VVEAVLAANPGLAELGPVLPHGTAIELPD--IPTTTTA 60
 
Name Accession Description Interval E-value
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
1-69 1.03e-24

P2-like prophage tail protein X [Mobilome: prophages, transposons];


Pssm-ID: 444028  Cd Length: 69  Bit Score: 86.85  E-value: 1.03e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2026148843  1 MTEYVTRDGDMADLIAFNYYGTRDGlVVEQLLDANPGLSGLGPLLPAGITIVLPDFTLPATQNAIHLWD 69
Cdd:COG5004    2 AMTYRTRQGDTLDALCWRYYGRTAG-VVEAVLAANPGLAALGPVLPAGTVVTLPDIPAAPTVETVRLWD 69
Phage_tail_X pfam05489
Phage Tail Protein X; This domain is found in a family of phage tail proteins. Visual analysis ...
 6-64 2.31e-14

Phage Tail Protein X; This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.


Pssm-ID: 283209  Cd Length: 60  Bit Score: 60.46  E-value: 2.31e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2026148843  6 TRDGDMADLIAFNYYGTRDGlVVEQLLDANPGLSGLGPLLPAGITIVLPDftLPATQNA 64
Cdd:pfam05489  5 ATQGDTVDALCWRYYGRTLG-VVEAVLAANPGLAELGPVLPHGTAIELPD--IPTTTTA 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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