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Conserved domains on  [gi|2235262585|ref|YP_010373099|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Teredorus bashanensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-116 5.14e-32

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member MTH00202:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 117  Bit Score: 108.93  E-value: 5.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 5.14e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 108.93  E-value: 5.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 4.86e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.86e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  19 ILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKtSNILYWWMSTSMFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2235262585  99 ILLSGLYYEWNQGMLK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 8.55e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 8.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   8 ILMSSIIPMMMILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKTSNIL 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPK-RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                          90       100
                  ....*....|....*....|....*....
gi 2235262585  88 -YWWMstSMFIMILLSGLYYEWNQGMLKW 115
Cdd:COG0838    91 gLIEM--LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 5.14e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 108.93  E-value: 5.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 6.65e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 108.41  E-value: 6.65e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.84e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 108.33  E-value: 6.84e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   3 TMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2235262585  83 TSNILYWWMSTSMFIMILLSGLYYEWNQGMLKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 4-116 6.28e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 98.52  E-value: 6.28e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   4 MMYTILMSSIIPMMMILLSKVIS--KKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIM 81
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHflPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2235262585  82 KTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 4.63e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 96.10  E-value: 4.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   2 MTMMYTILMSSIIPMMMILLSKVISKkMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIM 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2235262585  82 KTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00113   80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 2.53e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 94.22  E-value: 2.53e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKviskkMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00136    5 TTILTITIALSLILAIVSFWLPQ-----MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00136   80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWA 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 6.81e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 93.38  E-value: 6.81e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2235262585  81 MKTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-116 2.76e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 91.54  E-value: 2.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   2 MTMMYTILMSSIIPMMMILLSKVISKkMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIM 81
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQ-LNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2235262585  82 KTSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 3.58e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 91.50  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKvISKKMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAF-WLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2235262585  81 MKTSNILYWWMstSMFIMILLSGLYYEWNQGMLKW 115
Cdd:MTH00203   80 NQLSSLSLLLA--FLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 4.86e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 4.86e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  19 ILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKtSNILYWWMSTSMFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2235262585  99 ILLSGLYYEWNQGMLK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-116 1.94e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 89.67  E-value: 1.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   4 MMYTILMSSIIPMMMILLSKVISKkMNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPL---IPI 80
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPL-NNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2235262585  81 MKTSNILYWwmstSMFIMILLS-GLYYEWNQGMLKWA 116
Cdd:MTH00069   81 NTPTNTLFW----STLILILLTlGLIYEWIQGGLEWA 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 8.55e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.56  E-value: 8.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   8 ILMSSIIPMMMILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKTSNIL 87
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPK-RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90

                          90       100
                  ....*....|....*....|....*....
gi 2235262585  88 -YWWMstSMFIMILLSGLYYEWNQGMLKW 115
Cdd:COG0838    91 gLIEM--LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 3.94e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.45  E-value: 3.94e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   8 ILMSSIIPMMMILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPL-IPIMKTSNI 86
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPR-APDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWaVSFREIGWL 93

                          90       100       110
                  ....*....|....*....|....*....|
gi 2235262585  87 LYWWMstSMFIMILLSGLYYEWNQGMLKWA 116
Cdd:PRK06602   94 GFVEA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 5.09e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.89  E-value: 5.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKMNyDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPI 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2235262585  81 MKTSNILYWWMsTSMFIMILLSGLYYEWNQGMLKW 115
Cdd:MTH00055   84 YNQIGLFGFWV-MYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-115 9.71e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 67.39  E-value: 9.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   4 MMYTILMSSIIPMMMILLSKVISkkmnyDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKT 83
Cdd:MTH00018    7 LIFSVVLSALFSGASYFLGVKQP-----DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2235262585  84 SNILYWWMsTSMFIMILLSGLYYEWNQGMLKW 115
Cdd:MTH00018   82 IAPFGFWT-MVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 7-115 2.48e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.49  E-value: 2.48e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   7 TILMSSIIPMMMILLSKVISKKMNY--------DQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLI 78
Cdd:MTH00030    7 TIFFSTLLGVGIILLLVSISFTLGNsrigltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2235262585  79 PIMKTSNILYWWMSTSmFIMILLSGLYYEWNQGMLKW 115
Cdd:MTH00030   87 IVFNQLNLFSFWIVYT-FLIVLAIGLAYEWIKGGLEW 122
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
9-115 7.06e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.05  E-value: 7.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   9 LMSSIIPMMMILLSKVISKKM---NYDQEKSSPFECGFSPQTHARlPFSIQFFLISMLFLIFDIEIALILPLIPIMKtsn 85
Cdd:PRK08489   18 VLTFVAFFLTTRLARFISRKLaqkNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFK--- 93

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2235262585  86 ILYWWMSTSM--FIMILLSGLYYEWNQGMLKW 115
Cdd:PRK08489   94 LLGLFGLIEMllFIVLLTIGFIYAWKKGALEW 125
ndhC CHL00022
NADH dehydrogenase subunit 3
 8-115 1.32e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 48.83  E-value: 1.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   8 ILMSSIIPMMMILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPlipimktsnil 87
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPI-SKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP----------- 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2235262585  88 yWWMS-----------TSMFIMILLSGLYYEWNQGMLKW 115
Cdd:CHL00022   82 -WAMSfdvlgvsafieALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 31-115 1.24e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.59  E-value: 1.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  31 YDQEKSSPFECGFSPQTHARLP--FSIQFFLISMLFLIFDIEIALilpLIPIMKTSNILYWWMSTSM--FIMILLSGLYY 106
Cdd:PRK07928   33 YNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVF---LYPWAVSFDALGVFGLVEMalFMLTVFVAYAY 109


                  ....*....
gi 2235262585 107 EWNQGMLKW 115
Cdd:PRK07928  110 VWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.73e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 43.58  E-value: 1.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  32 DQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKTSNiLYWWMSTSMFIMILLSGLYYEWNQG 111
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLG-LFALIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 2235262585 112 MLKW 115
Cdd:PRK07756  118 VLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-117 7.58e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.42  E-value: 7.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585   1 MMTMMYTILMSSIIPMMMILLSKVISKKmNYDQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIpi 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVK-KFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLL-- 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2235262585  81 mktSNILYWWMSTSMFIMILLSGLYYEWNQGMLKWAM 117
Cdd:MTH00092   78 ---VSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 20-115 6.83e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 39.80  E-value: 6.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  20 LLSKVISKKMNY-------DQEKSSPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPLIPIMKTSNILYwWMS 92
Cdd:PRK06432   41 LKTEDILKKAAYedtppgsDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIP-FIE 119

                          90       100
                  ....*....|....*....|...
gi 2235262585  93 TSMFIMILLSGLYYEWNQGMLKW 115
Cdd:PRK06432  120 TLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 37-115 3.19e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.49  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2235262585  37 SPFECGFSPQTHARLPFSIQFFLISMLFLIFDIEIALILPlipiMKTSNILY---WWMstSMFIMILLSGLYYEWNQGML 113
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN----MPFQGLLFynfWYY--YFFLLLLFLGFVVELFSGYV 112


                  ..
gi 2235262585 114 KW 115
Cdd:MTH00060  113 RW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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