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Conserved domains on  [gi|56692805|ref|YP_164262|]
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coat protein [Sweet potato chlorotic fleck virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flexi_CP super family cl02836
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 108-251 7.93e-47

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


The actual alignment was detected with superfamily member pfam00286:

Pssm-ID: 425583  Cd Length: 138  Bit Score: 154.12  E-value: 7.93e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692805   108 SQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQqlyegdIDFRDANFKEAISRSSVAAVIKDKSTIR 187
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRF------TDLNGTFPGPAITREALAAVIKESCTLR 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56692805   188 KVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKFAAFDTFDFVTNHAAIKPLEGIARPPNSVE 251
Cdd:pfam00286  75 QFCAYYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N super family cl07103
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 50-99 2.51e-11

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


The actual alignment was detected with superfamily member pfam08358:

Pssm-ID: 149427  Cd Length: 52  Bit Score: 57.62  E-value: 2.51e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 56692805    50 DALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYSRPNFNTL 99
Cdd:pfam08358   3 TKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 108-251 7.93e-47

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 154.12  E-value: 7.93e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692805   108 SQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQqlyegdIDFRDANFKEAISRSSVAAVIKDKSTIR 187
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRF------TDLNGTFPGPAITREALAAVIKESCTLR 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56692805   188 KVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKFAAFDTFDFVTNHAAIKPLEGIARPPNSVE 251
Cdd:pfam00286  75 QFCAYYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 50-99 2.51e-11

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 57.62  E-value: 2.51e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 56692805    50 DALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYSRPNFNTL 99
Cdd:pfam08358   3 TKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 108-251 7.93e-47

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 154.12  E-value: 7.93e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56692805   108 SQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQqlyegdIDFRDANFKEAISRSSVAAVIKDKSTIR 187
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRF------TDLNGTFPGPAITREALAAVIKESCTLR 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56692805   188 KVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKFAAFDTFDFVTNHAAIKPLEGIARPPNSVE 251
Cdd:pfam00286  75 QFCAYYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 50-99 2.51e-11

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 57.62  E-value: 2.51e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 56692805    50 DALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYSRPNFNTL 99
Cdd:pfam08358   3 TKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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