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Conserved domains on  [gi|84488633|ref|YP_448816|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Stigmochelys pardalis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 566.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  161 FSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  241 TLTVILFLNPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488633  321 PMP 323
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 566.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  161 FSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  241 TLTVILFLNPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488633  321 PMP 323
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
12-308 1.71e-105

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 310.17  E-value: 1.71e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    92 LPLPI--PFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   170 FMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFL- 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84488633   249 -NPARINNTPELYpmsLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:pfam00146 243 gWLGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-304 4.86e-93

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 279.71  E-value: 4.86e-93
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:COG1005  16 LVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAF 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  92 LPLPI--PFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:COG1005  96 AVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSE 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633 170 FMVVQEpaylvTSSW-----PLMMMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLT 243
Cdd:COG1005 176 IVEAQA-----GGLWfilpqPLAFVVFfIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488633 244 VILFL----NPARINNTPELYPM-SLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005 251 TTLFLggwlGPFPILPLGGLPGIlWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 566.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  161 FSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  241 TLTVILFLNPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488633  321 PMP 323
Cdd:MTH00111 321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-322 4.34e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 497.59  E-value: 4.34e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00134   2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSL 160
Cdd:MTH00134  82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  161 FSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMN 240
Cdd:MTH00134 162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  241 TLTVILFLNPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00134 242 TLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLP 321


                 ..
gi 84488633  321 PM 322
Cdd:MTH00134 322 PQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-322 1.66e-177

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 493.75  E-value: 1.66e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSL 160
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  161 FSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMN 240
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  241 TLTVILFLNPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                 ..
gi 84488633  321 PM 322
Cdd:MTH00071 321 PM 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 12-321 4.56e-171

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 477.19  E-value: 4.56e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00104   7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   92 LPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFM 171
Cdd:MTH00104  87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  172 VVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNPA 251
Cdd:MTH00104 167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  252 RINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00104 247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 11-321 9.55e-144

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 407.76  E-value: 9.55e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   11 PLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSI 90
Cdd:MTH00218   8 LLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   91 WLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTF 170
Cdd:MTH00218  88 WMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  171 MVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNP 250
Cdd:MTH00218 168 NLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84488633  251 ArinntpeLYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00218 248 S-------LTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-322 3.96e-136

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 388.95  E-value: 3.96e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00040  11 LSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLW 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   92 LPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFM 171
Cdd:MTH00040  91 SLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSIS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  172 VVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLN-P 250
Cdd:MTH00040 171 NSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGgG 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488633  251 ARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPPM 322
Cdd:MTH00040 251 SPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 18-305 1.24e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 326.06  E-value: 1.24e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   18 ILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPLPIP 97
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   98 FPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVVQEPA 177
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  178 YLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNPARINNTp 257
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL- 252

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 84488633  258 eLYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLAL 305
Cdd:MTH00143 253 -LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 15-312 3.34e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 319.79  E-value: 3.34e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   15 VIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPL 94
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   95 PIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVVQ 174
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  175 EPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNparin 254
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLG----- 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488633  255 ntPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISM 312
Cdd:MTH00193 247 --GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGL 302
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 7-318 1.58e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 318.22  E-value: 1.58e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    7 TLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLL 86
Cdd:MTH00195   4 SVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   87 ALSIWLPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFN 166
Cdd:MTH00195  84 ALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFD 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  167 IQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVIL 246
Cdd:MTH00195 164 FTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTIL 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488633  247 FLNPARInntpelypMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSG 318
Cdd:MTH00195 244 FLGGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
12-308 1.71e-105

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 310.17  E-value: 1.71e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    92 LPLPI--PFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   170 FMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFL- 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84488633   249 -NPARINNTPELYpmsLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:pfam00146 243 gWLGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 12-311 1.16e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 300.80  E-value: 1.16e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00225   8 LIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILW 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   92 LPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFM 171
Cdd:MTH00225  88 SLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  172 VVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLnpa 251
Cdd:MTH00225 168 YNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF--- 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  252 riNNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHIS 311
Cdd:MTH00225 245 --GGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 12-321 5.53e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 292.02  E-value: 5.53e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00216  13 LIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVW 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   92 --LPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:MTH00216  93 gvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITE 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  170 FMVVQEPA-YLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFL 248
Cdd:MTH00216 173 IVLAQNNGiWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFL 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84488633  249 NpARINNTPELY--PMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00216 253 G-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 12-321 2.81e-97

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 290.09  E-value: 2.81e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00054   9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   92 --LPLPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:MTH00054  89 gvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  170 FMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLN 249
Cdd:MTH00054 169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLG 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84488633  250 ---PARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00054 249 gwlVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 12-304 4.86e-93

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 279.71  E-value: 4.86e-93
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:COG1005  16 LVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAF 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  92 LPLPI--PFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQT 169
Cdd:COG1005  96 AVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSE 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633 170 FMVVQEpaylvTSSW-----PLMMMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLT 243
Cdd:COG1005 176 IVEAQA-----GGLWfilpqPLAFVVFfIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488633 244 VILFL----NPARINNTPELYPM-SLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005 251 TTLFLggwlGPFPILPLGGLPGIlWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-308 1.59e-90

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 272.84  E-value: 1.59e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    1 MKTLVPTLTPPLAYVIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:PRK06076   6 PDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   81 ILALLLALSIWLPLPI--PFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSL 158
Cdd:PRK06076  86 VIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  159 SLFSGGFNIQTFMVVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILM 238
Cdd:PRK06076 166 VLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMIL 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84488633  239 MNTLTVILFL---NPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:PRK06076 246 VSALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 16-321 9.79e-81

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 248.78  E-value: 9.79e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   16 IPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW--LP 93
Cdd:MTH00029  18 VPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWaiVT 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   94 LPIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVV 173
Cdd:MTH00029  98 MDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVIS 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  174 QEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFL----- 248
Cdd:MTH00029 178 QRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLggwls 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  249 ------NPARINNTPELYPMSLTS-----KTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALS 317
Cdd:MTH00029 258 pldgipTPPEAFSIFEQIASSKSSfwfftKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFN 337


                 ....
gi 84488633  318 GLPP 321
Cdd:MTH00029 338 GVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 19-312 1.60e-79

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 244.69  E-value: 1.60e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   19 LMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPLPIPF 98
Cdd:MTH00010  17 LLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKH 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   99 PLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVVQepay 178
Cdd:MTH00010  97 PSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ---- 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  179 lvtSSWPLMMM------WYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNPAr 252
Cdd:MTH00010 173 ---YSWILLMIipltvsWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFI- 248

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  253 inNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISM 312
Cdd:MTH00010 249 --PSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 15-303 1.55e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 200.13  E-value: 1.55e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   15 VIPILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPL 94
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   95 PIPFPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVVq 174
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFSL- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  175 epaylvtSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNparin 254
Cdd:MTH00090 165 -------SLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK----- 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 84488633  255 ntpelypMSLTSKTMLLSTgFLWIRASYPRFRYDQLMHLLWKNFLPITL 303
Cdd:MTH00090 233 -------FSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 4-303 2.59e-48

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 165.51  E-value: 2.59e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633    4 LVPTLTPPLAYVIPILMAVafftLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPila 83
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIV----WLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP--- 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   84 LLLALSIWLP-LPIPFP----LADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSL 158
Cdd:CHL00032 103 SIAVISILLSyLVIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  159 SLFSGgfNIQTFMVVQEPAYLVTSSWPL------MMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAE 232
Cdd:CHL00032 183 SLLSN--SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  233 YSNILMMNTLTVILFLNPARIN----NTPELYPMSLTSKTMLLSTG----------FLWI----RASYPRFRYDQLMHLL 294
Cdd:CHL00032 261 YLNLLVSSLFVTVLYLGGWNLSipyiFIPELFEINKTGGVFGTTIGifitlaktylFLFIsittRWTLPRLRMDQLLNLG 340


                 ....*....
gi 84488633  295 WKNFLPITL 303
Cdd:CHL00032 341 WKFLLPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-296 6.06e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 157.39  E-value: 6.06e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   18 ILMAVAFFTLIERKMLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPLPIP 97
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633   98 FPLADLNLGILFMISISSLMVYSILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGFNIQTFMVVQEPA 177
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  178 YLVTssWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTVILFLNPARInntp 257
Cdd:MTH00058 174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFV---- 247

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 84488633  258 elypMSLTSKTMLLstgFLWIRASYPRFRYDQLMHLLWK 296
Cdd:MTH00058 248 ----SIMLLFHLLF---FMWARATLPRVRYDYFVNFFWE 279
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
12-308 1.83e-24

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 100.64  E-value: 1.83e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  12 LAYVIPILMAVAFFTLIERKMLGYMQLRKGPnivgpyGLLQPVADGVKLFIKEPIYPLNSSItLFTMSPILALLLALSIW 91
Cdd:COG0650   8 LLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALAAMLLAA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633  92 LPLPIPF------PLADLnLGILFMISISSLMvysILLSGWASNSKYAMMGALRAVAQTISYEVTLGIILLSLSLFSGGF 165
Cdd:COG0650  81 LLVPVLTtgpplsFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488633 166 NIQTFM---VVQEPAYLVTSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTL 242
Cdd:COG0650 157 SLSDIVayqAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488633 243 TVILFLnPARINNTPELYPMSLTSKTMLLSTGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:COG0650 237 FVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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