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Conserved domains on  [gi|89903003|ref|YP_516229|]
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L protein [Mammarenavirus praomyidis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arena_RNA_pol super family cl38204
Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins ...
 178-2209 0e+00

Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins (EC:2.7.7.48).


The actual alignment was detected with superfamily member pfam06317:

Pssm-ID: 399372  Cd Length: 2039  Bit Score: 2532.91  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    178 FEEAEYSRLCESLNVSGGKRSGIENINILSDHRSEHFDELLKLCHVGINNHMSSLDVKREIIQEFQAFRNKLQNGVIERQ 257
Cdd:pfam06317    1 FEESEYSRLCESLSMTSGRLSGVESLNCLKDNRSNHYDEVIASCHQGINNKLTAHEVKLQIEELYQVFRNRLRKGELEGQ 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    258 FLRVNREELIKAFNEMYTLRVgDKPELLDSLLNDYYHSCPLITMLYCELPNGKSCQSDI--SHVRGWRSLLNKVKSLRLI 335
Cdd:pfam06317   81 FLKVNKSQLLNELNNLYEDKV-TSDDIIEHLTFQAKRASPILRFLYANTQDRERGNSTIgeCQYQCWLSFLNKVKSLKIL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    336 NTRRKLMLIFDSILLLAHMKDL----SVNGHLVESEWMGSSFLSVNDRLVSLPATQKDLKTWLQRRtnRLSHSHQSQSAY 411
Cdd:pfam06317  160 NTRRKLLLILDALILLASKHDLfkqkALKGLRRSGLWLGQCFTSVNDRLVSFEATKEDLVKWVENR--KRSKILRSVSKN 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    412 EVFSTMVNRVLNKAKEVLLLVNLTFKDYNVDEDILSESSFTEMMSLEVNGVEPTINYEKNPIDRFSYNIQAMDPDNQSDL 491
Cdd:pfam06317  238 QILNSIFSKTISKAQTALLDVGISVDHYKIDMEVICHIPYDLIMDFDVSGVHPIMSYQRTKEETFPYMMGDEQLLNTTDL 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    492 KRLSSISLALVNSMKTSSTVKLRQNEHGKLRYKCVRCKEAYYQDFLIEGHRLMLIYQKTGECSKCYSVNDAVVGELCSFY 571
Cdd:pfam06317  318 ERLSSVSLALVNSMKTSSTVRLRQNEFGPARYQVVRCKEAYCQEFSLDGTEVQLIYQKTGECSKCYSINDNEDGELCSFY 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    572 ADPKRYFPAIFSDSVLQEMIDTMISWLTECSELKEFIKEIKSLLKMVVMVVLTNPTKRIQKFLQNLRYFTMAYVSEYHHK 651
Cdd:pfam06317  398 ADPKRFFLPIFSAEVLQTMIDTMISWIEDCNDLEDQLVIIRSLLRMLLLLILAHPSKRNQKLLQNLRYFVMAYVSDFHHK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    652 DLLEKLREDLITNCEFLLYRITRSILNIVFNVNVTTMITNRFKFILNLSYLCHLITKETPDRLTDQIKCFEKFIEPKMKF 731
Cdd:pfam06317  478 DLIDKLREELITDVEFLVYRLLRTLMQLVLGEGVKSMMTNRFKFILNVSYLCHLITKETPDRLTDQIKCFEKFLEPKVDF 557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    732 DSVNVNPLEPADQEELRSLLMSADKFLSKPDCFGDegilFKTPGVSRKIFSMMVSSFNNGSLFKQAELKNGVKDPLVVSG 811
Cdd:pfam06317  558 GHVSVNPADTATEEEEDDMVYNAKKFLSKTLDCTD----YKLPGVSKEYLSLLTSSFNNGSLFKEGEVKNEIKDPLITSG 633

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    812 cATALDLASNKSVVVNKYTDGDRIIEYDYDKLVATAVCQLSEVFSRKGKYVLSKEDYDFKIQQIMSDLVIGrSKLHGSEi 891
Cdd:pfam06317  634 -STALDLASNKSVVVNKYTDGSRVLNYDFNKLTASAVSQLTEVFSRKGKYLLNKSDYEYKVQKAMSNLVIG-SKQEKTD- 710

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    892 glNSCEEVDEVLIEG-GAADYFDSIKQSVDTVMSKF-----SWSGSESSATLKSEC-SIDDLSLALQDK-AQLRLIRNEL 963
Cdd:pfam06317  711 --RDEADLDEILFDGlEASEYFNQLKETVEKIVDQYrepvkGGSGNNGDGRVKSSTpSLNDLDEIVSGKfGYIRLIKGEL 788

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    964 SCHMVEDFDVMTLPYDTYEEICKSVYSDPSLRSKYFYLESLESCPLTKMAQAVCTRTFHDEEYFQCFKSLLLQMNANKLS 1043
Cdd:pfam06317  789 SNHMVEDFDPDVLPSDFYKEFCDAVYESSSLKPKYFYCGHMSQCPLGELTKNLSTRTYFDHEYFQCFKSILLQMNANALM 868

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1044 GKFNHYKSKCLNFKLDRDRLFNETRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPQSYNSQGPDTGRLKFSLSY 1123
Cdd:pfam06317  869 GKYTHYKRRNLNFKFDMGKLSDDVRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPTSYTSVGPDTGRLKFSLSY 948

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1124 KEQVGGNRELYIGDLRTKMFTRLIEDYFEALTSQFKGSCLNDEHEFENAVFSMKFNVSLGLLSYSLDHSKWGPMMTPFLF 1203
Cdd:pfam06317  949 KEQVGGNRELYIGDLRTKMFTRLIEDYFEAVSSQLSGSCLNNEKEFENAILSMKLNVSNGHLSYSMDHSKWGPMMCPFLF 1028

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1204 LATLQNINWPSLDTLSDAKSRDYVSSMLSWHIHKLVEVPFNVVTAMMKSFIKSKLGLKKNLSETMTERFFFEHFRLGKVP 1283
Cdd:pfam06317 1029 LTFLQNLILLSKDLQADIKGRDYVSTLLMWHMHKMVEVPFNVVEAMMKSFIKAQLGLRKKTKQSVTEDFFYQNFQVGVVP 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1284 SHISSILDKGQGILQNTSDFYGLISERFINYCISCLYEGNVDAFTSSDDQISLFDKSLSDLLEKDPDEFEYILEFHNYLS 1363
Cdd:pfam06317 1109 SHISSILDMGQGILHNTSDFYGLITERFINYAISCICGGTPDAYTSSDDQITLFDQQLTDLLVRDPEEFLELLEFHYYLS 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1364 DQLNKFISPKSVKGNFAAEFKSRFFVWGDEVPLLTKFVAASLHNIKCKEPHQLAETIDTIIDQAVANGVPVKLCNIVQER 1443
Cdd:pfam06317 1189 DQLNKFVSPKSVAGRFVAEFKSRFFVWGEEVPLLTKFVAAALHNVKCKEPHQLAETIDTICDQSVANGVPVHLVNLIQQR 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1444 TLNLLRYAQYPIDPFLMFCSSDVKDWVDGNRGYRIMRNIEMLEPNGTRKVRSFLRRLYNNLKTGLLHEEFTAAYLSGDPY 1523
Cdd:pfam06317 1269 TLQLLKYARFPIDPFLLNCETDVKDWVDGNRGYRIQRQIEGLIPDATSKIRSMLRRLYNRLKTGQLHEEFTTNLLSRDHL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1524 QSLAKLSKIFDTEILNDEEL----GLSWLNLSAYYPLRMVLRQKVIYTGAVNVEEEKLPTIVKTLQNKLSSNFTRGAQKL 1599
Cdd:pfam06317 1349 SALLNLCELLGVEPPSESDLmralEYSWLNLAAHHPLRMVLRQKIIYSGAVNLDDEKIPTLIKTLQNKLSSTFTRGAQKL 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1600 LSEAINRSAFQSCIASGFVGLCRTLGSKCVRGPERENFYIKSIMNQSMMMEGVSREL-VMGVDVWRVrnPLDNSRAQQKW 1678
Cdd:pfam06317 1429 LSEAINKSAFQSSIASGFIGLCKTLGSKCVRGPNKENLYIKSIQDLITDVKGICLVCnSRGVQYWRV--PLELRNESESI 1506

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1679 GNYFRPILWDYLCIALSTALEIGSWVLGEPKLKSPLPQMKFRPCDYFPMKPSVTRLLEDKVGFNHIIHSFRRLYPDIFEK 1758
Cdd:pfam06317 1507 VSYFRPLLWDYMCISLSNAIELGAWVLGEPKTPKVLSFFKHNPCDYFALKPTASRLLEDRVGLNHVIHSLRRLYPKVFEK 1586

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1759 HLLPFMSDLASTKMKWSPRVKFLDLCVMLDVNCEAMSLVSHIVKWKREEHYVILSDELSISHDRSHESLADERVVSTEDV 1838
Cdd:pfam06317 1587 HLLPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSDLAMSHVRTHEPMVEERVVSTSDV 1666

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1839 SENFLRQIYFESFARPFVATSRTLGSFTWFPHKTSLPESEGLASLGPFGTFIEKVIFKGIERPMYRHDLFSGYAWLDFDF 1918
Cdd:pfam06317 1667 CDNFMRQIYFESYVRPFVATTRTLGSFTWFPHKTSEPEGDGLHRLGPFSSFVEKVIHKGVERPMFKHDLMMGYAWIDFDI 1746

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1919 GEFYINSSKLIQYGLTEMRYFEDLSEFMSMLSSLKPGSIEISLTVNFQVKSQGESLREKFFIHCKFYGSFDVDGKFEFNN 1998
Cdd:pfam06317 1747 EDVRFNQNQLIAQGLVDPKHFDSLEDLFDAVASLPDGSLKFSITVRFRRKSQDASFKRKFAIHFSVTCSLNQQAVYLVHD 1826

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1999 IGVQYSGAINRSAVLDCWRLILTNSHFLGDKViWHLNTANIKDYLKDGSMVGEVVPIEVIINRDALRLDTLDFERVGPDV 2078
Cdd:pfam06317 1827 VTQMYSGAVSPCVLSDCWRLVLSGPTFKGKGV-FYVDSEMINEFLVDTNQLGHVTPVELILDMERLQFDEYDFTLVGPCD 1905

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   2079 NVVPLVVKDGYIFEGDKKLVPFNPSIHDQDFEILVKELciDDKELLKDMIQKMITVRGSQGLQWHSLDIVAVLTKNMPTN 2158
Cdd:pfam06317 1906 EPVPLVVRRGGLFEGTKKVASFTVVLQDQDLEKFVREL--GDPEDVNALLNQLWPYLKTTSDLLLGALSDMILDRLGLDM 1983

                         2010      2020      2030      2040      2050
                   ....*....|....*....|....*....|....*....|....*....|.
gi 89903003   2159 YKDFITESLSVLDSWTGFKGYSLCFSKTKNTLMIHTSEGNLRLKGKLCRKL 2209
Cdd:pfam06317 1984 HRSGLSAVLELVDDWVEFKGYALCYSKSRGDLMVQSSGGKLRLKGRTCEEL 2034
ArenaCapSnatch super family cl29053
Arenavirus cap snatching domain; This domain represents the N-terminal domain of the ...
 2-172 2.00e-68

Arenavirus cap snatching domain; This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.


The actual alignment was detected with superfamily member pfam17296:

Pssm-ID: 355929  Cd Length: 171  Bit Score: 228.19  E-value: 2.00e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003      2 EEQISEVKDIISKYLSNDDRLAKQKLAFLVQSEPKLLLIEGLKLLSLCIEIDSCEANGCDHNTKELSVENFLSENRVLCP 81
Cdd:pfam17296    1 DETISELKDLVRKYIPNRERLSRQKLAFLSQCEPRMLLQEGLKLLSNCIELDSCESHGCHHNTCDKSVEVILSDHGIPCP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003     82 GLPMVVPDGFKLNGNVLMILECFVRSSPANFEQKYREDLVKLNSLKEDLMTVGITMLPLIDGRTNFQTDRLPEWANERFR 161
Cdd:pfam17296   81 TLPLVIPDGYKLTGNTLILLECFVRSNPAEFERKWIEDMTKLLNLKEDLLRSGITLVPVVDGRTNYSNRFTPEWVNEKIR 160

                          170
                   ....*....|.
gi 89903003    162 TLLFSLLAFSQ 172
Cdd:pfam17296  161 DLLFELLRYSR 171
 
Name Accession Description Interval E-value
Arena_RNA_pol pfam06317
Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins ...
 178-2209 0e+00

Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins (EC:2.7.7.48).


Pssm-ID: 399372  Cd Length: 2039  Bit Score: 2532.91  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    178 FEEAEYSRLCESLNVSGGKRSGIENINILSDHRSEHFDELLKLCHVGINNHMSSLDVKREIIQEFQAFRNKLQNGVIERQ 257
Cdd:pfam06317    1 FEESEYSRLCESLSMTSGRLSGVESLNCLKDNRSNHYDEVIASCHQGINNKLTAHEVKLQIEELYQVFRNRLRKGELEGQ 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    258 FLRVNREELIKAFNEMYTLRVgDKPELLDSLLNDYYHSCPLITMLYCELPNGKSCQSDI--SHVRGWRSLLNKVKSLRLI 335
Cdd:pfam06317   81 FLKVNKSQLLNELNNLYEDKV-TSDDIIEHLTFQAKRASPILRFLYANTQDRERGNSTIgeCQYQCWLSFLNKVKSLKIL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    336 NTRRKLMLIFDSILLLAHMKDL----SVNGHLVESEWMGSSFLSVNDRLVSLPATQKDLKTWLQRRtnRLSHSHQSQSAY 411
Cdd:pfam06317  160 NTRRKLLLILDALILLASKHDLfkqkALKGLRRSGLWLGQCFTSVNDRLVSFEATKEDLVKWVENR--KRSKILRSVSKN 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    412 EVFSTMVNRVLNKAKEVLLLVNLTFKDYNVDEDILSESSFTEMMSLEVNGVEPTINYEKNPIDRFSYNIQAMDPDNQSDL 491
Cdd:pfam06317  238 QILNSIFSKTISKAQTALLDVGISVDHYKIDMEVICHIPYDLIMDFDVSGVHPIMSYQRTKEETFPYMMGDEQLLNTTDL 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    492 KRLSSISLALVNSMKTSSTVKLRQNEHGKLRYKCVRCKEAYYQDFLIEGHRLMLIYQKTGECSKCYSVNDAVVGELCSFY 571
Cdd:pfam06317  318 ERLSSVSLALVNSMKTSSTVRLRQNEFGPARYQVVRCKEAYCQEFSLDGTEVQLIYQKTGECSKCYSINDNEDGELCSFY 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    572 ADPKRYFPAIFSDSVLQEMIDTMISWLTECSELKEFIKEIKSLLKMVVMVVLTNPTKRIQKFLQNLRYFTMAYVSEYHHK 651
Cdd:pfam06317  398 ADPKRFFLPIFSAEVLQTMIDTMISWIEDCNDLEDQLVIIRSLLRMLLLLILAHPSKRNQKLLQNLRYFVMAYVSDFHHK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    652 DLLEKLREDLITNCEFLLYRITRSILNIVFNVNVTTMITNRFKFILNLSYLCHLITKETPDRLTDQIKCFEKFIEPKMKF 731
Cdd:pfam06317  478 DLIDKLREELITDVEFLVYRLLRTLMQLVLGEGVKSMMTNRFKFILNVSYLCHLITKETPDRLTDQIKCFEKFLEPKVDF 557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    732 DSVNVNPLEPADQEELRSLLMSADKFLSKPDCFGDegilFKTPGVSRKIFSMMVSSFNNGSLFKQAELKNGVKDPLVVSG 811
Cdd:pfam06317  558 GHVSVNPADTATEEEEDDMVYNAKKFLSKTLDCTD----YKLPGVSKEYLSLLTSSFNNGSLFKEGEVKNEIKDPLITSG 633

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    812 cATALDLASNKSVVVNKYTDGDRIIEYDYDKLVATAVCQLSEVFSRKGKYVLSKEDYDFKIQQIMSDLVIGrSKLHGSEi 891
Cdd:pfam06317  634 -STALDLASNKSVVVNKYTDGSRVLNYDFNKLTASAVSQLTEVFSRKGKYLLNKSDYEYKVQKAMSNLVIG-SKQEKTD- 710

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    892 glNSCEEVDEVLIEG-GAADYFDSIKQSVDTVMSKF-----SWSGSESSATLKSEC-SIDDLSLALQDK-AQLRLIRNEL 963
Cdd:pfam06317  711 --RDEADLDEILFDGlEASEYFNQLKETVEKIVDQYrepvkGGSGNNGDGRVKSSTpSLNDLDEIVSGKfGYIRLIKGEL 788

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    964 SCHMVEDFDVMTLPYDTYEEICKSVYSDPSLRSKYFYLESLESCPLTKMAQAVCTRTFHDEEYFQCFKSLLLQMNANKLS 1043
Cdd:pfam06317  789 SNHMVEDFDPDVLPSDFYKEFCDAVYESSSLKPKYFYCGHMSQCPLGELTKNLSTRTYFDHEYFQCFKSILLQMNANALM 868

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1044 GKFNHYKSKCLNFKLDRDRLFNETRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPQSYNSQGPDTGRLKFSLSY 1123
Cdd:pfam06317  869 GKYTHYKRRNLNFKFDMGKLSDDVRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPTSYTSVGPDTGRLKFSLSY 948

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1124 KEQVGGNRELYIGDLRTKMFTRLIEDYFEALTSQFKGSCLNDEHEFENAVFSMKFNVSLGLLSYSLDHSKWGPMMTPFLF 1203
Cdd:pfam06317  949 KEQVGGNRELYIGDLRTKMFTRLIEDYFEAVSSQLSGSCLNNEKEFENAILSMKLNVSNGHLSYSMDHSKWGPMMCPFLF 1028

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1204 LATLQNINWPSLDTLSDAKSRDYVSSMLSWHIHKLVEVPFNVVTAMMKSFIKSKLGLKKNLSETMTERFFFEHFRLGKVP 1283
Cdd:pfam06317 1029 LTFLQNLILLSKDLQADIKGRDYVSTLLMWHMHKMVEVPFNVVEAMMKSFIKAQLGLRKKTKQSVTEDFFYQNFQVGVVP 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1284 SHISSILDKGQGILQNTSDFYGLISERFINYCISCLYEGNVDAFTSSDDQISLFDKSLSDLLEKDPDEFEYILEFHNYLS 1363
Cdd:pfam06317 1109 SHISSILDMGQGILHNTSDFYGLITERFINYAISCICGGTPDAYTSSDDQITLFDQQLTDLLVRDPEEFLELLEFHYYLS 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1364 DQLNKFISPKSVKGNFAAEFKSRFFVWGDEVPLLTKFVAASLHNIKCKEPHQLAETIDTIIDQAVANGVPVKLCNIVQER 1443
Cdd:pfam06317 1189 DQLNKFVSPKSVAGRFVAEFKSRFFVWGEEVPLLTKFVAAALHNVKCKEPHQLAETIDTICDQSVANGVPVHLVNLIQQR 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1444 TLNLLRYAQYPIDPFLMFCSSDVKDWVDGNRGYRIMRNIEMLEPNGTRKVRSFLRRLYNNLKTGLLHEEFTAAYLSGDPY 1523
Cdd:pfam06317 1269 TLQLLKYARFPIDPFLLNCETDVKDWVDGNRGYRIQRQIEGLIPDATSKIRSMLRRLYNRLKTGQLHEEFTTNLLSRDHL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1524 QSLAKLSKIFDTEILNDEEL----GLSWLNLSAYYPLRMVLRQKVIYTGAVNVEEEKLPTIVKTLQNKLSSNFTRGAQKL 1599
Cdd:pfam06317 1349 SALLNLCELLGVEPPSESDLmralEYSWLNLAAHHPLRMVLRQKIIYSGAVNLDDEKIPTLIKTLQNKLSSTFTRGAQKL 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1600 LSEAINRSAFQSCIASGFVGLCRTLGSKCVRGPERENFYIKSIMNQSMMMEGVSREL-VMGVDVWRVrnPLDNSRAQQKW 1678
Cdd:pfam06317 1429 LSEAINKSAFQSSIASGFIGLCKTLGSKCVRGPNKENLYIKSIQDLITDVKGICLVCnSRGVQYWRV--PLELRNESESI 1506

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1679 GNYFRPILWDYLCIALSTALEIGSWVLGEPKLKSPLPQMKFRPCDYFPMKPSVTRLLEDKVGFNHIIHSFRRLYPDIFEK 1758
Cdd:pfam06317 1507 VSYFRPLLWDYMCISLSNAIELGAWVLGEPKTPKVLSFFKHNPCDYFALKPTASRLLEDRVGLNHVIHSLRRLYPKVFEK 1586

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1759 HLLPFMSDLASTKMKWSPRVKFLDLCVMLDVNCEAMSLVSHIVKWKREEHYVILSDELSISHDRSHESLADERVVSTEDV 1838
Cdd:pfam06317 1587 HLLPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSDLAMSHVRTHEPMVEERVVSTSDV 1666

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1839 SENFLRQIYFESFARPFVATSRTLGSFTWFPHKTSLPESEGLASLGPFGTFIEKVIFKGIERPMYRHDLFSGYAWLDFDF 1918
Cdd:pfam06317 1667 CDNFMRQIYFESYVRPFVATTRTLGSFTWFPHKTSEPEGDGLHRLGPFSSFVEKVIHKGVERPMFKHDLMMGYAWIDFDI 1746

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1919 GEFYINSSKLIQYGLTEMRYFEDLSEFMSMLSSLKPGSIEISLTVNFQVKSQGESLREKFFIHCKFYGSFDVDGKFEFNN 1998
Cdd:pfam06317 1747 EDVRFNQNQLIAQGLVDPKHFDSLEDLFDAVASLPDGSLKFSITVRFRRKSQDASFKRKFAIHFSVTCSLNQQAVYLVHD 1826

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1999 IGVQYSGAINRSAVLDCWRLILTNSHFLGDKViWHLNTANIKDYLKDGSMVGEVVPIEVIINRDALRLDTLDFERVGPDV 2078
Cdd:pfam06317 1827 VTQMYSGAVSPCVLSDCWRLVLSGPTFKGKGV-FYVDSEMINEFLVDTNQLGHVTPVELILDMERLQFDEYDFTLVGPCD 1905

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   2079 NVVPLVVKDGYIFEGDKKLVPFNPSIHDQDFEILVKELciDDKELLKDMIQKMITVRGSQGLQWHSLDIVAVLTKNMPTN 2158
Cdd:pfam06317 1906 EPVPLVVRRGGLFEGTKKVASFTVVLQDQDLEKFVREL--GDPEDVNALLNQLWPYLKTTSDLLLGALSDMILDRLGLDM 1983

                         2010      2020      2030      2040      2050
                   ....*....|....*....|....*....|....*....|....*....|.
gi 89903003   2159 YKDFITESLSVLDSWTGFKGYSLCFSKTKNTLMIHTSEGNLRLKGKLCRKL 2209
Cdd:pfam06317 1984 HRSGLSAVLELVDDWVEFKGYALCYSKSRGDLMVQSSGGKLRLKGRTCEEL 2034
ArenaCapSnatch pfam17296
Arenavirus cap snatching domain; This domain represents the N-terminal domain of the ...
 2-172 2.00e-68

Arenavirus cap snatching domain; This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.


Pssm-ID: 340012  Cd Length: 171  Bit Score: 228.19  E-value: 2.00e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003      2 EEQISEVKDIISKYLSNDDRLAKQKLAFLVQSEPKLLLIEGLKLLSLCIEIDSCEANGCDHNTKELSVENFLSENRVLCP 81
Cdd:pfam17296    1 DETISELKDLVRKYIPNRERLSRQKLAFLSQCEPRMLLQEGLKLLSNCIELDSCESHGCHHNTCDKSVEVILSDHGIPCP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003     82 GLPMVVPDGFKLNGNVLMILECFVRSSPANFEQKYREDLVKLNSLKEDLMTVGITMLPLIDGRTNFQTDRLPEWANERFR 161
Cdd:pfam17296   81 TLPLVIPDGYKLTGNTLILLECFVRSNPAEFERKWIEDMTKLLNLKEDLLRSGITLVPVVDGRTNYSNRFTPEWVNEKIR 160

                          170
                   ....*....|.
gi 89903003    162 TLLFSLLAFSQ 172
Cdd:pfam17296  161 DLLFELLRYSR 171
capSnatchArena TIGR04202
RNA endonuclease, cap-snatching, arenavirus family; This model describes a shared signature ...
 86-146 2.37e-25

RNA endonuclease, cap-snatching, arenavirus family; This model describes a shared signature region from an RNA endonuclease region associated with cap-snatching for mRNA production by RNA viruses. This domain usually is part of a multifunctional protein, the L protein responsible for RNA-dependent RNA polymerase activity. Cap-snatching is a viral alternative to synthesizing a eukaryotic-like mRNA cap itself.


Pssm-ID: 275049  Cd Length: 61  Bit Score: 100.73  E-value: 2.37e-25
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89903003     86 VVPDGFKLNGNVLMILECFVRSSPANFEQKYREDLVKLNSLKEDLMTVGITMLPLIDGRTN 146
Cdd:TIGR04202    1 VTPDNYKLTGNVLILLEVFVRVDPESFEKKYKEKYEKLLSLKGDLLSPGITLVPVVDGRTD 61
 
Name Accession Description Interval E-value
Arena_RNA_pol pfam06317
Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins ...
 178-2209 0e+00

Arenavirus RNA polymerase; This family consists of several Arenavirus RNA polymerase proteins (EC:2.7.7.48).


Pssm-ID: 399372  Cd Length: 2039  Bit Score: 2532.91  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    178 FEEAEYSRLCESLNVSGGKRSGIENINILSDHRSEHFDELLKLCHVGINNHMSSLDVKREIIQEFQAFRNKLQNGVIERQ 257
Cdd:pfam06317    1 FEESEYSRLCESLSMTSGRLSGVESLNCLKDNRSNHYDEVIASCHQGINNKLTAHEVKLQIEELYQVFRNRLRKGELEGQ 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    258 FLRVNREELIKAFNEMYTLRVgDKPELLDSLLNDYYHSCPLITMLYCELPNGKSCQSDI--SHVRGWRSLLNKVKSLRLI 335
Cdd:pfam06317   81 FLKVNKSQLLNELNNLYEDKV-TSDDIIEHLTFQAKRASPILRFLYANTQDRERGNSTIgeCQYQCWLSFLNKVKSLKIL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    336 NTRRKLMLIFDSILLLAHMKDL----SVNGHLVESEWMGSSFLSVNDRLVSLPATQKDLKTWLQRRtnRLSHSHQSQSAY 411
Cdd:pfam06317  160 NTRRKLLLILDALILLASKHDLfkqkALKGLRRSGLWLGQCFTSVNDRLVSFEATKEDLVKWVENR--KRSKILRSVSKN 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    412 EVFSTMVNRVLNKAKEVLLLVNLTFKDYNVDEDILSESSFTEMMSLEVNGVEPTINYEKNPIDRFSYNIQAMDPDNQSDL 491
Cdd:pfam06317  238 QILNSIFSKTISKAQTALLDVGISVDHYKIDMEVICHIPYDLIMDFDVSGVHPIMSYQRTKEETFPYMMGDEQLLNTTDL 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    492 KRLSSISLALVNSMKTSSTVKLRQNEHGKLRYKCVRCKEAYYQDFLIEGHRLMLIYQKTGECSKCYSVNDAVVGELCSFY 571
Cdd:pfam06317  318 ERLSSVSLALVNSMKTSSTVRLRQNEFGPARYQVVRCKEAYCQEFSLDGTEVQLIYQKTGECSKCYSINDNEDGELCSFY 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    572 ADPKRYFPAIFSDSVLQEMIDTMISWLTECSELKEFIKEIKSLLKMVVMVVLTNPTKRIQKFLQNLRYFTMAYVSEYHHK 651
Cdd:pfam06317  398 ADPKRFFLPIFSAEVLQTMIDTMISWIEDCNDLEDQLVIIRSLLRMLLLLILAHPSKRNQKLLQNLRYFVMAYVSDFHHK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    652 DLLEKLREDLITNCEFLLYRITRSILNIVFNVNVTTMITNRFKFILNLSYLCHLITKETPDRLTDQIKCFEKFIEPKMKF 731
Cdd:pfam06317  478 DLIDKLREELITDVEFLVYRLLRTLMQLVLGEGVKSMMTNRFKFILNVSYLCHLITKETPDRLTDQIKCFEKFLEPKVDF 557

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    732 DSVNVNPLEPADQEELRSLLMSADKFLSKPDCFGDegilFKTPGVSRKIFSMMVSSFNNGSLFKQAELKNGVKDPLVVSG 811
Cdd:pfam06317  558 GHVSVNPADTATEEEEDDMVYNAKKFLSKTLDCTD----YKLPGVSKEYLSLLTSSFNNGSLFKEGEVKNEIKDPLITSG 633

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    812 cATALDLASNKSVVVNKYTDGDRIIEYDYDKLVATAVCQLSEVFSRKGKYVLSKEDYDFKIQQIMSDLVIGrSKLHGSEi 891
Cdd:pfam06317  634 -STALDLASNKSVVVNKYTDGSRVLNYDFNKLTASAVSQLTEVFSRKGKYLLNKSDYEYKVQKAMSNLVIG-SKQEKTD- 710

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    892 glNSCEEVDEVLIEG-GAADYFDSIKQSVDTVMSKF-----SWSGSESSATLKSEC-SIDDLSLALQDK-AQLRLIRNEL 963
Cdd:pfam06317  711 --RDEADLDEILFDGlEASEYFNQLKETVEKIVDQYrepvkGGSGNNGDGRVKSSTpSLNDLDEIVSGKfGYIRLIKGEL 788

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003    964 SCHMVEDFDVMTLPYDTYEEICKSVYSDPSLRSKYFYLESLESCPLTKMAQAVCTRTFHDEEYFQCFKSLLLQMNANKLS 1043
Cdd:pfam06317  789 SNHMVEDFDPDVLPSDFYKEFCDAVYESSSLKPKYFYCGHMSQCPLGELTKNLSTRTYFDHEYFQCFKSILLQMNANALM 868

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1044 GKFNHYKSKCLNFKLDRDRLFNETRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPQSYNSQGPDTGRLKFSLSY 1123
Cdd:pfam06317  869 GKYTHYKRRNLNFKFDMGKLSDDVRISERESNSEALSKALSLTNCTTAALKNLCFYSQESPTSYTSVGPDTGRLKFSLSY 948

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1124 KEQVGGNRELYIGDLRTKMFTRLIEDYFEALTSQFKGSCLNDEHEFENAVFSMKFNVSLGLLSYSLDHSKWGPMMTPFLF 1203
Cdd:pfam06317  949 KEQVGGNRELYIGDLRTKMFTRLIEDYFEAVSSQLSGSCLNNEKEFENAILSMKLNVSNGHLSYSMDHSKWGPMMCPFLF 1028

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1204 LATLQNINWPSLDTLSDAKSRDYVSSMLSWHIHKLVEVPFNVVTAMMKSFIKSKLGLKKNLSETMTERFFFEHFRLGKVP 1283
Cdd:pfam06317 1029 LTFLQNLILLSKDLQADIKGRDYVSTLLMWHMHKMVEVPFNVVEAMMKSFIKAQLGLRKKTKQSVTEDFFYQNFQVGVVP 1108

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1284 SHISSILDKGQGILQNTSDFYGLISERFINYCISCLYEGNVDAFTSSDDQISLFDKSLSDLLEKDPDEFEYILEFHNYLS 1363
Cdd:pfam06317 1109 SHISSILDMGQGILHNTSDFYGLITERFINYAISCICGGTPDAYTSSDDQITLFDQQLTDLLVRDPEEFLELLEFHYYLS 1188

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1364 DQLNKFISPKSVKGNFAAEFKSRFFVWGDEVPLLTKFVAASLHNIKCKEPHQLAETIDTIIDQAVANGVPVKLCNIVQER 1443
Cdd:pfam06317 1189 DQLNKFVSPKSVAGRFVAEFKSRFFVWGEEVPLLTKFVAAALHNVKCKEPHQLAETIDTICDQSVANGVPVHLVNLIQQR 1268

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1444 TLNLLRYAQYPIDPFLMFCSSDVKDWVDGNRGYRIMRNIEMLEPNGTRKVRSFLRRLYNNLKTGLLHEEFTAAYLSGDPY 1523
Cdd:pfam06317 1269 TLQLLKYARFPIDPFLLNCETDVKDWVDGNRGYRIQRQIEGLIPDATSKIRSMLRRLYNRLKTGQLHEEFTTNLLSRDHL 1348

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1524 QSLAKLSKIFDTEILNDEEL----GLSWLNLSAYYPLRMVLRQKVIYTGAVNVEEEKLPTIVKTLQNKLSSNFTRGAQKL 1599
Cdd:pfam06317 1349 SALLNLCELLGVEPPSESDLmralEYSWLNLAAHHPLRMVLRQKIIYSGAVNLDDEKIPTLIKTLQNKLSSTFTRGAQKL 1428

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1600 LSEAINRSAFQSCIASGFVGLCRTLGSKCVRGPERENFYIKSIMNQSMMMEGVSREL-VMGVDVWRVrnPLDNSRAQQKW 1678
Cdd:pfam06317 1429 LSEAINKSAFQSSIASGFIGLCKTLGSKCVRGPNKENLYIKSIQDLITDVKGICLVCnSRGVQYWRV--PLELRNESESI 1506

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1679 GNYFRPILWDYLCIALSTALEIGSWVLGEPKLKSPLPQMKFRPCDYFPMKPSVTRLLEDKVGFNHIIHSFRRLYPDIFEK 1758
Cdd:pfam06317 1507 VSYFRPLLWDYMCISLSNAIELGAWVLGEPKTPKVLSFFKHNPCDYFALKPTASRLLEDRVGLNHVIHSLRRLYPKVFEK 1586

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1759 HLLPFMSDLASTKMKWSPRVKFLDLCVMLDVNCEAMSLVSHIVKWKREEHYVILSDELSISHDRSHESLADERVVSTEDV 1838
Cdd:pfam06317 1587 HLLPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSDLAMSHVRTHEPMVEERVVSTSDV 1666

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1839 SENFLRQIYFESFARPFVATSRTLGSFTWFPHKTSLPESEGLASLGPFGTFIEKVIFKGIERPMYRHDLFSGYAWLDFDF 1918
Cdd:pfam06317 1667 CDNFMRQIYFESYVRPFVATTRTLGSFTWFPHKTSEPEGDGLHRLGPFSSFVEKVIHKGVERPMFKHDLMMGYAWIDFDI 1746

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1919 GEFYINSSKLIQYGLTEMRYFEDLSEFMSMLSSLKPGSIEISLTVNFQVKSQGESLREKFFIHCKFYGSFDVDGKFEFNN 1998
Cdd:pfam06317 1747 EDVRFNQNQLIAQGLVDPKHFDSLEDLFDAVASLPDGSLKFSITVRFRRKSQDASFKRKFAIHFSVTCSLNQQAVYLVHD 1826

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   1999 IGVQYSGAINRSAVLDCWRLILTNSHFLGDKViWHLNTANIKDYLKDGSMVGEVVPIEVIINRDALRLDTLDFERVGPDV 2078
Cdd:pfam06317 1827 VTQMYSGAVSPCVLSDCWRLVLSGPTFKGKGV-FYVDSEMINEFLVDTNQLGHVTPVELILDMERLQFDEYDFTLVGPCD 1905

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003   2079 NVVPLVVKDGYIFEGDKKLVPFNPSIHDQDFEILVKELciDDKELLKDMIQKMITVRGSQGLQWHSLDIVAVLTKNMPTN 2158
Cdd:pfam06317 1906 EPVPLVVRRGGLFEGTKKVASFTVVLQDQDLEKFVREL--GDPEDVNALLNQLWPYLKTTSDLLLGALSDMILDRLGLDM 1983

                         2010      2020      2030      2040      2050
                   ....*....|....*....|....*....|....*....|....*....|.
gi 89903003   2159 YKDFITESLSVLDSWTGFKGYSLCFSKTKNTLMIHTSEGNLRLKGKLCRKL 2209
Cdd:pfam06317 1984 HRSGLSAVLELVDDWVEFKGYALCYSKSRGDLMVQSSGGKLRLKGRTCEEL 2034
ArenaCapSnatch pfam17296
Arenavirus cap snatching domain; This domain represents the N-terminal domain of the ...
 2-172 2.00e-68

Arenavirus cap snatching domain; This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.


Pssm-ID: 340012  Cd Length: 171  Bit Score: 228.19  E-value: 2.00e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003      2 EEQISEVKDIISKYLSNDDRLAKQKLAFLVQSEPKLLLIEGLKLLSLCIEIDSCEANGCDHNTKELSVENFLSENRVLCP 81
Cdd:pfam17296    1 DETISELKDLVRKYIPNRERLSRQKLAFLSQCEPRMLLQEGLKLLSNCIELDSCESHGCHHNTCDKSVEVILSDHGIPCP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89903003     82 GLPMVVPDGFKLNGNVLMILECFVRSSPANFEQKYREDLVKLNSLKEDLMTVGITMLPLIDGRTNFQTDRLPEWANERFR 161
Cdd:pfam17296   81 TLPLVIPDGYKLTGNTLILLECFVRSNPAEFERKWIEDMTKLLNLKEDLLRSGITLVPVVDGRTNYSNRFTPEWVNEKIR 160

                          170
                   ....*....|.
gi 89903003    162 TLLFSLLAFSQ 172
Cdd:pfam17296  161 DLLFELLRYSR 171
capSnatchArena TIGR04202
RNA endonuclease, cap-snatching, arenavirus family; This model describes a shared signature ...
 86-146 2.37e-25

RNA endonuclease, cap-snatching, arenavirus family; This model describes a shared signature region from an RNA endonuclease region associated with cap-snatching for mRNA production by RNA viruses. This domain usually is part of a multifunctional protein, the L protein responsible for RNA-dependent RNA polymerase activity. Cap-snatching is a viral alternative to synthesizing a eukaryotic-like mRNA cap itself.


Pssm-ID: 275049  Cd Length: 61  Bit Score: 100.73  E-value: 2.37e-25
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89903003     86 VVPDGFKLNGNVLMILECFVRSSPANFEQKYREDLVKLNSLKEDLMTVGITMLPLIDGRTN 146
Cdd:TIGR04202    1 VTPDNYKLTGNVLILLEVFVRVDPESFEKKYKEKYEKLLSLKGDLLSPGITLVPVVDGRTD 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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