2P8Y: Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDP:sordarin cryo-EM reconstruction

PDB ID: 2P8YDownload
MMDB ID: 46529
PDB Deposition Date: 2007/3/23
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 11.7  Å
Source Organism:
Similar Structures:
Biological Unit for 2P8Y: monomeric; determined by author and by software (PISA)
Molecular Components in 2P8Y
Label Count Molecule
Protein (1 molecule)
1
Elongation Factor 2
(Gene symbol: EFT2)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
ADENOSINE-5-DIPHOSPHORIBOSEADENOSINE-5-DIPHOSPHORIBOSE
2
1
[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID
3
1
GUANOSINE-5'-DIPHOSPHATEGUANOSINE-5'-DIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303