4A3I: RNA Polymerase II binary complex with DNA

PDB ID: 4A3IDownload
MMDB ID: 97137
PDB Deposition Date: 2011/9/30
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 3.8  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4A3I: 14-meric; determined by author and by software (PISA)
Molecular Components in 4A3I
Label Count Molecule
Proteins (12 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 2
Molecule annotation
1
Rpb7, DNA-directed RNA Polymerase II Subunit Rpb7
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 4
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*gp*cp*ap*cp*ap*ap*cp*tp*gp*cp*gp*gp*cp*t)-3'
Molecule annotation
1
Template DNA 27-mer
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
8
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303