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4KO3:
Low X-ray dose structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air
PDB ID:
4KO3
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MMDB ID:
175287
PDB Deposition Date:
2013/5/11
Updated in MMDB:
2022/10
Experimental Method:
x-ray diffraction
Resolution:
1.7 Å
Source Organism:
Desulfomicrobium baculatum DSM 4028
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Taxonomy
Molecule
Desulfomicrobium baculatum DSM 4028
L, M
Desulfomicrobium baculatum
S, T
Similar Structures:
VAST+
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Biological Unit for 4KO3: dimeric; determined by author and by software (PISA)
Molecular Components in 4KO3
Label
Count
Molecule
Proteins (2 molecules)
S
1
Periplasmic [nifese] Hydrogenase Small Subunit
L
1
Nickel-dependent Hydrogenase Large Subunit
Chemicals and Non-standard biopolymers (12 molecules)
1
3
IRON/SULFUR CLUSTER
2
2
CALCIUM ION
3
1
CHLORIDE ION
4
3
GLYCEROL
5
1
CARBONMONOXIDE-(DICYANO) IRON
6
1
NICKEL (II) ION
7
1
HYDROSULFURIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303