5ELX: S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3

PDB ID: 5ELXDownload
MMDB ID: 136752
PDB Deposition Date: 2015/11/5
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.81  Å
Source Organism:
Similar Structures:
Biological Unit for 5ELX: dimeric; determined by author and by software (PISA)
Molecular Components in 5ELX
Label Count Molecule
Protein (1 molecule)
1
Atp-dependent RNA Helicase Dbp5
Molecule annotation
Nucleotide(1 molecule)
1
RNA (5'-r(p*up*up*up*up*up*u)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
[(2~{R},3~{R},4~{R},5~{S})-2-(6-aminopurin-9-yl)-4-oxidanyl-5-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate[(2~{R},3~{R},4~{R},5~{S})-2-(6-aminopurin-9-yl)-4-oxidanyl-5-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
4
2
NITRATE IONNITRATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303