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5FZ1:
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 2,4-dichloro-N-pyridin-3-ylbenzamide (E48115b) (ligand modelled based on PANDDA event map)
PDB ID:
5FZ1
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MMDB ID:
138961
PDB Deposition Date:
2016/3/10
Updated in MMDB:
2016/05
Experimental Method:
x-ray diffraction
Resolution:
2.39 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
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Biological Unit for 5FZ1: monomeric; determined by author and by software (PISA)
Molecular Components in 5FZ1
Label
Count
Molecule
Protein (1 molecule)
A
1
Lysine-specific Demethylase 5B, Lysine-specific Demethylase 5B
(Gene symbol:
KDM5B
)
Chemicals and Non-standard biopolymers (20 molecules)
1
2
ZINC ION
2
3
DIMETHYL SULFOXIDE
3
1
MANGANESE (II) ION
4
1
PHOSPHATE ION
5
12
1,2-ETHANEDIOL
6
1
2,4-dichloro-N-(pyridin-3-yl)benzamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303