5OOM: Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

PDB ID: 5OOMDownload
MMDB ID: 154409
PDB Deposition Date: 2017/8/8
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.03  Å
Source Organism:
Similar Structures:
Biological Unit for 5OOM: 55-meric; determined by author and by software (PISA)
Molecular Components in 5OOM
Label Count Molecule
Proteins (53 molecules)
1
39S Ribosomal Protein L2, Mitochondrial
(Gene symbol: MRPL2)
Molecule annotation
1
39S Ribosomal Protein L3, Mitochondrial
(Gene symbol: MRPL3)
Molecule annotation
1
39S Ribosomal Protein L4, Mitochondrial
(Gene symbol: MRPL4)
Molecule annotation
1
39S Ribosomal Protein L9, Mitochondrial
(Gene symbol: MRPL9)
Molecule annotation
1
39S Ribosomal Protein L10, Mitochondrial
(Gene symbol: MRPL10)
Molecule annotation
1
39S Ribosomal Protein L11, Mitochondrial
(Gene symbol: MRPL11)
Molecule annotation
1
39S Ribosomal Protein L13, Mitochondrial
(Gene symbol: MRPL13)
Molecule annotation
1
39S Ribosomal Protein L14, Mitochondrial
(Gene symbol: MRPL14)
Molecule annotation
1
39S Ribosomal Protein L15, Mitochondrial
(Gene symbol: MRPL15)
Molecule annotation
1
39S Ribosomal Protein L16, Mitochondrial
(Gene symbol: MRPL16)
Molecule annotation
1
39S Ribosomal Protein L17, Mitochondrial
(Gene symbol: MRPL17)
Molecule annotation
1
39S Ribosomal Protein L18, Mitochondrial
(Gene symbol: MRPL18)
Molecule annotation
1
39S Ribosomal Protein L19, Mitochondrial
(Gene symbol: MRPL19)
Molecule annotation
1
39S Ribosomal Protein L20, Mitochondrial
(Gene symbol: MRPL20)
Molecule annotation
1
39S Ribosomal Protein L21, Mitochondrial
(Gene symbol: MRPL21)
Molecule annotation
1
39S Ribosomal Protein L22, Mitochondrial
(Gene symbol: MRPL22)
Molecule annotation
1
39S Ribosomal Protein L23, Mitochondrial
(Gene symbol: MRPL23)
Molecule annotation
1
39S Ribosomal Protein L24, Mitochondrial
(Gene symbol: MRPL24)
Molecule annotation
1
39S Ribosomal Protein L27, Mitochondrial
(Gene symbol: MRPL27)
Molecule annotation
1
39S Ribosomal Protein L28, Mitochondrial
(Gene symbol: MRPL28)
Molecule annotation
1
39S Ribosomal Protein L47, Mitochondrial
(Gene symbol: MRPL47)
Molecule annotation
1
39S Ribosomal Protein L30, Mitochondrial
(Gene symbol: MRPL30)
Molecule annotation
1
39S Ribosomal Protein L32, Mitochondrial
(Gene symbol: MRPL32)
Molecule annotation
1
39S Ribosomal Protein L33, Mitochondrial
(Gene symbol: MRPL33)
Molecule annotation
1
39S Ribosomal Protein L34, Mitochondrial
(Gene symbol: MRPL34)
Molecule annotation
1
39S Ribosomal Protein L35, Mitochondrial
(Gene symbol: MRPL35)
Molecule annotation
1
39S Ribosomal Protein L37, Mitochondrial
(Gene symbol: MRPL37)
Molecule annotation
1
39S Ribosomal Protein L38, Mitochondrial
(Gene symbol: MRPL38)
Molecule annotation
1
39S Ribosomal Protein L39, Mitochondrial
(Gene symbol: MRPL39)
Molecule annotation
1
39S Ribosomal Protein L40, Mitochondrial
(Gene symbol: MRPL40)
Molecule annotation
1
39S Ribosomal Protein L41, Mitochondrial
(Gene symbol: MRPL41)
Molecule annotation
1
39S Ribosomal Protein L42, Mitochondrial
(Gene symbol: MRPL42)
Molecule annotation
1
39S Ribosomal Protein L43, Mitochondrial
(Gene symbol: MRPL43)
Molecule annotation
1
39S Ribosomal Protein L44, Mitochondrial
(Gene symbol: MRPL44)
Molecule annotation
1
39S Ribosomal Protein L45, Mitochondrial
(Gene symbol: MRPL45)
Molecule annotation
1
39S Ribosomal Protein L46, Mitochondrial
(Gene symbol: MRPL46)
Molecule annotation
1
39S Ribosomal Protein L48, Mitochondrial
(Gene symbol: MRPL48)
Molecule annotation
1
39S Ribosomal Protein L49, Mitochondrial
(Gene symbol: MRPL49)
Molecule annotation
1
39S Ribosomal Protein L50, Mitochondrial
(Gene symbol: MRPL50)
Molecule annotation
1
39S Ribosomal Protein L51, Mitochondrial
(Gene symbol: MRPL51)
Molecule annotation
1
39S Ribosomal Protein L52, Mitochondrial
(Gene symbol: MRPL52)
Molecule annotation
1
39S Ribosomal Protein L53, Mitochondrial
(Gene symbol: MRPL53)
Molecule annotation
1
39S Ribosomal Protein L54, Mitochondrial
(Gene symbol: MRPL54)
Molecule annotation
1
39S Ribosomal Protein L55, Mitochondrial
(Gene symbol: MRPL55)
Molecule annotation
1
Ribosomal Protein 63, Mitochondrial
(Gene symbol: MRPL57)
Molecule annotation
1
Peptidyl-trna Hydrolase Ict1, Mitochondrial
(Gene symbol: MRPL58)
Molecule annotation
1
Growth Arrest and DNA Damage-inducible Proteins-interacting Protein 1
(Gene symbol: GADD45GIP1)
Molecule annotation
1
39S Ribosomal Protein S18a, Mitochondrial
(Gene symbol: MRPS18A)
Molecule annotation
1
39S Ribosomal Protein S30, Mitochondrial
(Gene symbol: MRPS30)
Molecule annotation
1
Unknown Protein or Protein Extension
Molecule annotation
1
Mitochondrial Assembly of Ribosomal Large Subunit Protein 1
(Gene symbol: MALSU1)
Molecule annotation
1
Mief1 Upstream Open Reading Frame Protein
(Gene symbol: MIEF1)
Molecule annotation
1
Acyl Carrier Protein, Mitochondrial
(Gene symbol: NDUFAB1)
Molecule annotation
Nucleotides(2 molecules)
1
16S Ribosomal RNA
Molecule annotation
1
Mitochondrial Trnaval
Molecule annotation
Chemicals and Non-standard biopolymers (52 molecules)
1
49
MAGNESIUM IONMAGNESIUM ION
2
2
ZINC IONZINC ION
3
1
4'-PHOSPHOPANTETHEINE4'-PHOSPHOPANTETHEINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303