National Center for
Biotechnology Information

6EM4: State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

PDB ID:

MMDB ID:

157841

PDB Deposition Date:

2017/10/1

Updated in MMDB:

2022/11

Experimental Method:

electron microscopy

Resolution:

4.1 Å

Source Organism:

Saccharomyces cerevisiae S288C▼

Taxonomy	Molecule
Saccharomyces cerevisiae S288C	x, F, 3, 4, 5, A, J, u, v, y, B, C, e, E, f, G, h, i, j, L, M, N, O, P, Q, S, V, Y, D, K, n, o, t, H
Saccharomyces cerevisiae	1, 2, 6

Similar Structures:

Molecular Components in 6EM4
Label	Count	Molecule
Proteins (34 molecules)
x	1	Ribosome Production Factor 1
F	1	60S Ribosomal Protein L7-a
3	1	Protein Mak16
4	1	Ribosomal RNA-processing Protein 1
5	1	Ribosome Biogenesis Protein Nsa1
A	1	Ribosome Biogenesis Protein Brx1
J	1	rRNA-processing Protein Ebp2
u	1	Ribosome Biogenesis Protein Rlp24
v	1	Nucleolar Protein 16
y	1	Eukaryotic Translation Initiation Factor 6
B	1	60S Ribosomal Protein L3
C	1	60S Ribosomal Protein L4-a
e	1	60S Ribosomal Protein L32
E	1	60S Ribosomal Protein L6-a
f	1	60S Ribosomal Protein L33-a
G	1	60S Ribosomal Protein L8-a
h	1	60S Ribosomal Protein L35-a
i	1	60S Ribosomal Protein L36-b
j	1	60S Ribosomal Protein L37-a
L	1	60S Ribosomal Protein L13-a
M	1	60S Ribosomal Protein L14-a
N	1	60S Ribosomal Protein L15-a
O	1	60S Ribosomal Protein L16-a
P	1	60S Ribosomal Protein L17-a
Q	1	60S Ribosomal Protein L18-a
S	1	60S Ribosomal Protein L20-a
V	1	60S Ribosomal Protein L23-a
Y	1	60S Ribosomal Protein L26-a
D	1	Atp-dependent RNA Helicase Has1
K	1	Proteasome-interacting Protein Cic1
n	1	Pescadillo Homolog
o	1	Ribosome Biogenesis Protein 15
t	1	Ribosome Biogenesis Protein Rlp7
H	1	Ribosome Biogenesis Protein Erb1
Nucleotides(3 molecules)
1	1	25S Ribosomal RNA
2	1	5.8s Ribosomal RNA
6	1	Internal Transcribed Spacer 1

* Click molecule labels to explore molecular sequence information.

Citing MMDB