6G5W: Crystal Structure of KDM4A with compound YP-03-038

PDB ID: 6G5WDownload
MMDB ID: 174112
PDB Deposition Date: 2018/3/30
Updated in MMDB: 2022/12
Experimental Method:
x-ray diffraction
Resolution: 1.83  Å
Source Organism:
Similar Structures:
Biological Unit for 6G5W: monomeric; determined by author
Molecular Components in 6G5W
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4A
(Gene symbol: KDM4A)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
ZINC IONZINC ION
2
2
NICKEL (II) IONNICKEL (II) ION
3
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
2
CITRIC ACIDCITRIC ACID
5
1
(4~{R})-5-methyl-4-phenyl-2-pyridin-2-yl-pyrazolidin-3-one(4~{R})-5-methyl-4-phenyl-2-pyridin-2-yl-pyrazolidin-3-one
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303