6HU9: III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae

PDB ID: 6HU9Download
MMDB ID: 170104
PDB Deposition Date: 2018/10/5
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.35  Å
Source Organism:
Similar Structures:
Biological Unit for 6HU9: 44-meric; determined by author
Molecular Components in 6HU9
Label Count Molecule
Proteins (44 molecules)
2
Cytochrome B-c1 Complex Subunit 1, Mitochondrial
(Gene symbol: COR1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
(Gene symbol: QCR2)
Molecule annotation
2
Cytochrome B
(Gene symbol: COB)
Molecule annotation
2
Cytochrome C1, Heme Protein, Mitochondrial
(Gene symbol: CYT1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
(Gene symbol: RIP1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 6
(Gene symbol: QCR6)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 7
(Gene symbol: QCR7)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 8
(Gene symbol: QCR8)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 9
(Gene symbol: QCR9)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 10
(Gene symbol: QCR10)
Molecule annotation
2
Cytochrome C Oxidase Subunit 1
(Gene symbol: COX1)
Molecule annotation
2
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
2
Cytochrome C Oxidase Subunit 3
(Gene symbol: COX3)
Molecule annotation
2
Cytochrome C Oxidase Subunit 4, Mitochondrial
(Gene symbol: COX4)
Molecule annotation
2
Cytochrome C Oxidase Polypeptide 5A, Mitochondrial
(Gene symbol: COX5A)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6, Mitochondrial
(Gene symbol: COX6)
Molecule annotation
2
Cytochrome C Oxidase Subunit 7
(Gene symbol: COX7)
Molecule annotation
2
Cytochrome C Oxidase Polypeptide Viii, Mitochondrial
(Gene symbol: COX8)
Molecule annotation
2
Cytochrome C Oxidase Subunit 7A
(Gene symbol: COX9)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6B
(Gene symbol: COX12)
Molecule annotation
2
Cytochrome C Oxidase Subunit 6A, Mitochondrial
(Gene symbol: COX13)
Molecule annotation
2
Cox26
(Gene symbol: COX26)
Molecule annotation
Chemicals and Non-standard biopolymers (69 molecules)
1
28
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE (Link to PubChem not yet available)DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
2
4
PROTOPORPHYRIN IX CONTAINING FE (Link to PubChem not yet available)PROTOPORPHYRIN IX CONTAINING FE
3
1
5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL (Link to PubChem not yet available)5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
4
8
CARDIOLIPIN (Link to PubChem not yet available)CARDIOLIPIN
5
8
1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE (Link to PubChem not yet available)1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
6
2
HEME C (Link to PubChem not yet available)HEME C
7
2
FE2/S2 (INORGANIC) CLUSTER (Link to PubChem not yet available)FE2/S2 (INORGANIC) CLUSTER
8
2
COPPER (II) ION (Link to PubChem not yet available)COPPER (II) ION
9
4
HEME-A (Link to PubChem not yet available)HEME-A
10
2
CALCIUM ION (Link to PubChem not yet available)CALCIUM ION
11
2
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
12
4
DINUCLEAR COPPER ION (Link to PubChem not yet available)DINUCLEAR COPPER ION
13
2
ZINC ION (Link to PubChem not yet available)ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303