National Center for
Biotechnology Information

6YSU: Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

PDB ID:

6YSU Download

MMDB ID:

191489

PDB Deposition Date:

2020/4/23

Updated in MMDB:

2022/11

Experimental Method:

electron microscopy

Resolution:

3.7 Å

Source Organism:

Apis mellifera▼

Taxonomy	Molecule
Apis mellifera	v
Escherichia coli	0, 1, 2, 3, 4, 5, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b , c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, w, x, y

Similar Structures:

Biological Unit for 6YSU: 57-meric; determined by author

Molecular Components in 6YSU
Label	Count	Molecule
Proteins (52 molecules)
0	1	50S Ribosomal Protein L32
1	1	50S Ribosomal Protein L33
2	1	50S Ribosomal Protein L34
3	1	50S Ribosomal Protein L35
4	1	50S Ribosomal Protein L36
5	1	50S Ribosomal Protein L10
C	1	50S Ribosomal Protein L2
D	1	50S Ribosomal Protein L3
E	1	50S Ribosomal Protein L4
F	1	50S Ribosomal Protein L5
G	1	50S Ribosomal Protein L6
H	1	50S Ribosomal Protein L9
I	1	50S Ribosomal Protein L11
J	1	50S Ribosomal Protein L13
K	1	50S Ribosomal Protein L14
L	1	50S Ribosomal Protein L15
M	1	50S Ribosomal Protein L16
N	1	50S Ribosomal Protein L17
O	1	50S Ribosomal Protein L18
P	1	50S Ribosomal Protein L19
Q	1	50S Ribosomal Protein L20
R	1	50S Ribosomal Protein L21
S	1	50S Ribosomal Protein L22
T	1	50S Ribosomal Protein L23
U	1	50S Ribosomal Protein L24
V	1	50S Ribosomal Protein L25
W	1	50S Ribosomal Protein L27
X	1	50S Ribosomal Protein L28
Y	1	50S Ribosomal Protein L29
Z	1	50S Ribosomal Protein L30
b	1	30S Ribosomal Protein S2
c	1	30S Ribosomal Protein S3
d	1	30S Ribosomal Protein S4
e	1	30S Ribosomal Protein S5
f	1	30S Ribosomal Protein S6
g	1	30S Ribosomal Protein S7
h	1	30S Ribosomal Protein S8
i	1	30S Ribosomal Protein S9
j	1	30S Ribosomal Protein S10
k	1	30S Ribosomal Protein S11
l	1	30S Ribosomal Protein S12
m	1	30S Ribosomal Protein S13
n	1	30S Ribosomal Protein S14
o	1	30S Ribosomal Protein S15
p	1	30S Ribosomal Protein S16
q	1	30S Ribosomal Protein S17
r	1	30S Ribosomal Protein S18
s	1	30S Ribosomal Protein S19
t	1	30S Ribosomal Protein S20
u	1	30S Ribosomal Protein S21
v	1	Api137
y	1	Alternative Stalled-ribosome Rescue Factor B
Nucleotides(5 molecules)
A	1	23S Ribosomal RNA
B	1	5S Ribosomal RNA
a	1	16S Ribosomal RNA
w	1	P-site Trnaphe
x	1	RNA (5'-r(papupgpupupc)-3')
Chemicals and Non-standard biopolymers (358 molecules)
1	356	MAGNESIUM ION
2	1	ZINC ION
3	1	SODIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303