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7BTB: Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

PDB ID:	7BTB Download
MMDB ID:	194481
PDB Deposition Date:	2020/4/1
Updated in MMDB:	2020/12
Experimental Method:	electron microscopy
Resolution:	3.22 Å
Source Organism:	Saccharomyces cerevisiae S288C
Similar Structures:

Biological Unit for 7BTB: 53-meric; determined by author

Molecular Components in 7BTB
Label	Count	Molecule
Proteins (49 molecules)
L	1	60S Ribosomal Protein L13-a
a	1	60S Ribosomal Protein L28
A	1	60S Ribosomal Protein L2-a
B	1	60S Ribosomal Protein L3
C	1	60S Ribosomal Protein L4-a
D	1	60S Ribosomal Protein L5
E	1	60S Ribosomal Protein L6-a
F	1	60S Ribosomal Protein L7-a
G	1	60S Ribosomal Protein L8-a
H	1	60S Ribosomal Protein L9-a
J	1	60S Ribosomal Protein L11-a
K	1	Proteasome-interacting Protein Cic1
M	1	60S Ribosomal Protein L14-a
N	1	60S Ribosomal Protein L15-a
O	1	60S Ribosomal Protein L16-a
P	1	60S Ribosomal Protein L17-a
Q	1	60S Ribosomal Protein L18-a
R	1	60S Ribosomal Protein L19-a
S	1	60S Ribosomal Protein L20-a
T	1	60S Ribosomal Protein L21-a
U	1	60S Ribosomal Protein L22-a
V	1	60S Ribosomal Protein L23-a
W	1	Ribosome Assembly Factor Mrt4
X	1	60S Ribosomal Protein L25
Y	1	60S Ribosomal Protein L26-a
Z	1	60S Ribosomal Protein L27-a
b	1	Nucleolar Gtp-binding Protein 1
c	1	60S Ribosomal Protein L30
d	1	60S Ribosomal Protein L31-a
e	1	60S Ribosomal Protein L32
f	1	60S Ribosomal Protein L33-a
g	1	60S Ribosomal Protein L34-a
h	1	60S Ribosomal Protein L35-a
i	1	60S Ribosomal Protein L36-a
j	1	60S Ribosomal Protein L37-a
k	1	60S Ribosomal Protein L38
m	1	Nucleolar Gtp-binding Protein 2
n	1	Pescadillo Homolog
o	1	Ribosome Biogenesis Protein 15
p	1	60S Ribosomal Protein L43-a
q	1	Ribosome Biogenesis Protein Nop53
r	1	Ribosome Biogenesis Protein Nsa2
t	1	Ribosome Biogenesis Protein Rlp7
u	1	Ribosome Biogenesis Protein Rlp24
v	1	Ribosome Biogenesis Protein Rpf2
w	1	Regulator of Ribosome Biosynthesis
x	1	Ribosome Assembly Protein 4
y	1	Eukaryotic Translation Initiation Factor 6
z	1	Upf0642 Protein Ybl028c
Nucleotides(4 molecules)
1	1	Rdn25-1 rRNA
2	1	Rdn5.8-1 rRNA
3	1	Rdn5-2 rRNA
6	1	Its2-1 Miscrna
Chemicals and Non-standard biopolymers (7 molecules)
1	2	GUANOSINE-5'-TRIPHOSPHATE
2	2	MAGNESIUM ION
3	3	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303