7O4I: Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble

PDB ID: 7O4IDownload
MMDB ID: 203265
PDB Deposition Date: 2021/4/6
Updated in MMDB: 2021/08
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Saccharomyces cerevisiae S288C
Similar Structures:
Biological Unit for 7O4I: 30-meric; determined by author
Molecular Components in 7O4I
Label Count Molecule
Proteins (28 molecules)
1
General Transcription and DNA Repair Factor IIH Helicase Subunit XPD
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb1
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb2
Molecule annotation
1
RNA Polymerase II Transcription Factor B Subunit 3
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb4
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb5
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Ssl1
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Helicase Subunit XPB
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Molecule annotation
1
Transcription Initiation Factor IIB
Molecule annotation
1
Tata-box-binding Protein
Molecule annotation
1
Transcription Initiation Factor IIF Subunit Alpha
Molecule annotation
1
Transcription Initiation Factor IIF Subunit Beta
Molecule annotation
1
Transcription Initiation Factor IIA Large Subunit,transcription Initiation Factor IIA Large Subunit
Molecule annotation
1
Transcription Initiation Factor IIA Subunit 2
Molecule annotation
1
Transcription Initiation Factor IIE Subunit Alpha
Molecule annotation
1
Transcription Initiation Factor IIE Subunit Beta
Molecule annotation
Nucleotides(2 molecules)
1
Non-template DNA
Molecule annotation
1
Template DNA
Molecule annotation
Chemicals and Non-standard biopolymers (22 molecules)
1
17
1
2
1
* Click molecule labels to explore molecular sequence information.

Citing MMDB