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8VNC:
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s
PDB ID:
8VNC
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MMDB ID:
249628
PDB Deposition Date:
2024/1/13
Updated in MMDB:
2024/07
Experimental Method:
x-ray diffraction
Resolution:
1.62 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
C, c, D, d
Physarum polycephalum
A, B
Similar Structures:
VAST+
Download sequence data
Biological Unit for 8VNC: hexameric; determined by author and by software (PISA)
Molecular Components in 8VNC
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Intron-encoded Endonuclease I-ppoi
Nucleotides(4 molecules)
C
D
2
DNA (5'-d(*tp*tp*gp*ap*cp*tp*cp*tp*cp*tp*tp*ap*a)-3')
c
d
2
DNA (5'-d(p*gp*ap*gp*ap*gp*tp*cp*a)-3')
Chemicals and Non-standard biopolymers (11 molecules)
1
5
GLYCEROL
2
4
ZINC ION
3
2
MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303