9B5I: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg)

PDB ID: 9B5IDownload
MMDB ID: 248029
PDB Deposition Date: 2024/3/22
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 2.7  Å
Source Organism:
Similar Structures:
Biological Unit for 9B5I: tetrameric; determined by author
Molecular Components in 9B5I
Label Count Molecule
Proteins (4 molecules)
1
Ubiquitin-activating Enzyme E1 1
Molecule annotation
1
Polyubiquitin
Molecule annotation
1
Ubiquitin-conjugating Enzyme E2 4
Molecule annotation
1
Ubiquitin
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
PYROPHOSPHATE 2-PYROPHOSPHATE 2-
3
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
4
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303