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Taxonomy browser (Thermodesulfobacteriota)

Thermodesulfobacteriota

Taxonomy ID: 200940 (for references in articles please use NCBI:txid200940)
current name
Thermodesulfobacteriota corrig. Garrity and Holt 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
Thermodesulfobacteria Garrity and Holt 2002
homotypic synonym:
"Thermodesulfobacteraeota" Oren et al. 2015, effective name 1) in [Oren A et al. (2015)]
"Thermodesulfobacteriota" Whitman et al. 2018, effective name 2),3) in [Whitman WB et al. (2018)]
NCBI BLAST name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Desulfobacterota Waite et al. 2023 in [Göker M & Oren A (2023)]
homotypic synonym:
"Desulfobacterota" Waite et al. 2020, effective name 4) in [Waite DW et al. (2020b)]
Lineage( full )
cellular organisms; Bacteria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 310,610 -
Protein 3,339,082 221
Structure 606 -
Genome 569 -
Popset 830 717
Conserved Domains 51 1
GEO Datasets 1,690 -
PubMed Central 22,045 1,223
Gene 179,738 -
SRA Experiments 2,878 41
Protein Clusters 1,297 -
Identical Protein Groups 6,330,459 221
BioProject 1,298 5
BioSample 13,484 41
Assembly 6,451 -
PubChem BioAssay 38 -
Taxonomy 3,091 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Oren A et al. (2015), PubMed: abstract
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rosselló-Móra, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65(11):4284-4287.
Whitman WB et al. (2018), PubMed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
Göker M & Oren A (2023), PubMed: abstract
Göker, M., and Oren, A. "Valid publication of four additional phylum names." Int. J. Syst. Evol. Microbiol. (2023) 73(9):0.006024.
Waite DW et al. (2020b), PubMed: abstract
Waite, D.W., Chuvochina, M., Pelikan, C., Parks, D.H., Yilmaz, P., Wagner, M., Loy, A., Naganuma, T., Nakai, R., Whitman, W.B., Hahn, M.W., Kuever, J., and Hugenholtz, P. "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities." Int. J. Syst. Evol. Microbiol. (2020) 70(11):5972-6016.
Garrity GM & Holt JG (2001f)
Garrity, G.M., and Holt, J.G. "Phylum BIII. Thermodesulfobacteria phy. nov." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). p. 389. [No PubMed record available.]
Oren A et al. (2015)
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65:4284-4287.
Waite DW et al. (2020)
Waite, D.W., Chuvochina, M., Pelikan, C., Parks, D.H., Yilmaz, P., Wagner, M., Loy, A., Naganuma, T., Nakai, R., Whitman, W.B., Hahn, M.W., Kuever, J., and Hugenholtz, P. "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities." Int. J. Syst. Evol. Microbiol. (2020) 70(11):5972-6016.
Whitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Thermodesulfobacteria taxonomy/phylogenetic Encyclopedia of life
Thermodesulfobacteria taxonomy/phylogenetic Lifemap
Thermodesulfobacteriota | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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