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Taxonomy browser (Parabacteroides merdae)

Parabacteroides merdae

Taxonomy ID: 46503 (for references in articles please use NCBI:txid46503)
current name
Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006 emend. Hahnke et al. 2016
basionym:
Bacteroides merdae Johnson et al. 1986
type strain of Bacteroides merdae: ATCC:43184, CCUG:38734, CIP:104202, JCM:9497, NCTC:13052, VPI T4-1
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 30,931 29,602 328
Protein 164,366 145,137 -
Structure 15 - -
Genome 2 1 -
Popset 4 4 -
GEO Datasets 8 8 -
PubMed Central 602 602 -
Gene 26,797 19,062 -
SRA Experiments 232 166 -
Protein Clusters 3,215 3,215 -
Identical Protein Groups 102,117 98,708 -
BioProject 97 86 -
BioSample 2,104 2,040 4
Assembly 328 318 -
PubChem BioAssay 20 20 -
Taxonomy 6 1 -

Comments and References:

Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
Johnson JL et al. (1986)
Johnson, J.L., Moore, W.E.C., and Moore, L.V.H. "Bacteroides caccae sp. nov., Bacteroides merdae sp. nov., and Bacteroides stercoris sp. nov. isolated from human feces." Int. J. Syst. Bacteriol. (1986) 36:499-501. [No PubMed record available.]
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Sakamoto M & Benno Y (2006)
Sakamoto, M., and Benno, Y. "Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov." Int. J. Syst. Evol. Microbiol. (2006) 56(7):1599-1605.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Parabacteroides merdae meta-databases BacDive
Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD: 5 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2 records from this provider culture/stock collections Global Catalogue of Microorganisms
38 records from this provider organism-specific Integrated Microbial Genomes
Parabacteroides merdae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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