rLacAgi1.alt

Organism name:

Lacerta agilis (lizards & snakes)

Isolate:

rLacAgi1

Sex:

female

BioSample:

SAMN12629509

BioProject:

PRJNA562019

Submitter:

Vertebrate Genomes Project

Date:

2019/12/23

Assembly type:

alternate-pseudohaplotype

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_009819545.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

WNMT01

Assembly method:

FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-24; VGP assembly pipeline individual v. 1.5

Expected final version:

no

Genome coverage:

63.42x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_009819535.1 (principal pseudohaplotype of diploid)

IDs: 5428141 [UID] 15714888 [GenBank]