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Trachops_cirrhosus_HiC

Organism name:
Trachops cirrhosus (bats)
Infraspecific name:
Specimen-voucher: AMNH-Mammalogy-279525
Isolate:
AMNH-AMCC-225240
Sex:
male
BioSample:
SAMN29758784
BioProject:
PRJNA512907
Submitter:
DNA Zoo
Date:
2023/02/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028533065.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPYXV01
Assembly method:
3D-DNA and JBAT (see dnazoo.org/methods) v. v. 2022
Expected final version:
yes
Genome coverage:
106x
Sequencing technology:
Illumina NovaSeq 6000

IDs: 15856171 [UID] 40700088 [GenBank]

See Genome Information for Trachops cirrhosus

History (Show revision history)

Comment

Global statistics

Total sequence length2,179,537,627
Total ungapped length2,164,628,127
Gaps between scaffolds0
Number of scaffolds396,519
Scaffold N50124,458,213
Scaffold L507
Number of contigs432,766
Contig N5060,077
Contig L509,424
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)396,519

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028533095.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM052538.1n/an/a0
Chromosome 2CM052539.1n/an/a0
Chromosome 3CM052540.1n/an/a0
Chromosome 4CM052541.1n/an/a0
Chromosome 5CM052542.1n/an/a0
Chromosome 6CM052543.1n/an/a0
Chromosome 7CM052544.1n/an/a0
Chromosome 8CM052545.1n/an/a0
Chromosome 9CM052546.1n/an/a0
Chromosome 10CM052547.1n/an/a0
Chromosome 11CM052548.1n/an/a0
Chromosome 12CM052549.1n/an/a0
Chromosome 13CM052550.1n/an/a0
Chromosome 14CM052551.1n/an/a0
Chromosome 15CM052552.1n/an/a0
unplacedn/an/an/a396,504

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,179,537,627396,5192,164,628,127124,458,21336,2470
Chromosome 1194,552,9721193,002,572194,552,9723,7160
Chromosome 2192,606,1021191,087,002192,606,1023,6270
Chromosome 3191,776,0531190,304,653191,776,0533,5220
Chromosome 4190,467,3641189,044,064190,467,3643,4090
Chromosome 5156,523,4351155,262,735156,523,4353,0150
Chromosome 6147,700,8711146,534,271147,700,8712,7580
Chromosome 7124,458,2131123,423,213124,458,2132,4660
Chromosome 8102,311,7161101,581,216102,311,7161,7450
Chromosome 993,600,872192,948,37293,600,8721,5690
Chromosome 1092,273,997191,473,69792,273,9971,9110
Chromosome 1184,446,433183,759,43384,446,4331,6460
Chromosome 1283,367,320182,675,72083,367,3201,6480
Chromosome 1361,076,781160,589,98161,076,7811,1480
Chromosome 1445,216,561144,863,46145,216,5618470
Chromosome 1571,126,897170,119,69771,126,8972,7360
unplaced348,032,040396,504347,958,0403,3194840