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Nasua_narica_HiC

Organism name:
Nasua narica (White-nosed coati)
Isolate:
Pearl
Sex:
female
BioSample:
SAMN14122072
BioProject:
PRJNA512907
Submitter:
DNA Zoo
Date:
2023/02/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028533885.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAPYYJ01
Assembly method:
3D-DNA v. 2019; JBAT v. 2019 (see dnazoo.org/methods)
Expected final version:
yes
Genome coverage:
105x
Sequencing technology:
HiSeq X Ten; NextSeq 500; Illumina NovaSeq 6000

IDs: 15866431 [UID] 40725448 [GenBank]

History (Show revision history)

Comment

Global statistics

Total sequence length2,610,174,539
Total ungapped length2,596,641,939
Gaps between scaffolds0
Number of scaffolds1,091,317
Scaffold N50119,764,535
Scaffold L509
Number of contigs1,127,599
Contig N5064,559
Contig L5010,510
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)1,091,317

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028534145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM052797.1n/an/a0
Chromosome 2CM052798.1n/an/a0
Chromosome 3CM052799.1n/an/a0
Chromosome 4CM052800.1n/an/a0
Chromosome 5CM052801.1n/an/a0
Chromosome 6CM052802.1n/an/a0
Chromosome 7CM052803.1n/an/a0
Chromosome 8CM052804.1n/an/a0
Chromosome 9CM052805.1n/an/a0
Chromosome 10CM052806.1n/an/a0
Chromosome 11CM052807.1n/an/a0
Chromosome 12CM052808.1n/an/a0
Chromosome 13CM052809.1n/an/a0
Chromosome 14CM052810.1n/an/a0
Chromosome 15CM052811.1n/an/a0
Chromosome 16CM052812.1n/an/a0
Chromosome 17CM052813.1n/an/a0
Chromosome 18CM052814.1n/an/a0
Chromosome 19CM052815.1n/an/a0
unplacedn/an/an/a1,091,298

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,610,174,5391,091,3172,596,641,939119,764,53536,2820
Chromosome 1125,835,6951125,034,995125,835,6952,1630
Chromosome 2169,167,1551168,066,755169,167,1552,9360
Chromosome 3195,726,3971194,558,797195,726,3973,1800
Chromosome 4178,976,0651177,816,765178,976,0652,9570
Chromosome 5103,085,6961102,280,196103,085,6962,1910
Chromosome 6129,741,6891128,903,789129,741,6892,2070
Chromosome 749,939,801149,627,70149,939,8019130
Chromosome 852,298,324151,966,42452,298,3249710
Chromosome 933,937,624133,706,62433,937,6246660
Chromosome 1092,564,334191,956,03492,564,3341,5550
Chromosome 11119,764,5351118,961,535119,764,5352,1260
Chromosome 1280,688,754180,217,95480,688,7541,2880
Chromosome 13137,770,4561136,870,256137,770,4562,3740
Chromosome 14173,898,0791172,758,679173,898,0792,9580
Chromosome 15121,163,6281120,345,828121,163,6282,1420
Chromosome 1673,944,925173,464,12573,944,9251,2720
Chromosome 1780,736,395180,239,29580,736,3951,3590
Chromosome 1859,119,919158,773,31959,119,9199540
Chromosome 1992,700,766192,008,06692,700,7661,7950
unplaced539,114,3021,091,298539,084,8026052750