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Rhinoceros_unicornis_HiC

Organism name:
Rhinoceros unicornis (greater Indian rhinoceros)
Isolate:
Sample0755
Sex:
male
BioSample:
SAMN14122078
BioProject:
PRJNA512907
Submitter:
DNA Zoo
Date:
2023/02/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028646465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAQQSS01
Assembly method:
3D-DNA v. 2020; JBAT v. 2020 (see dnazoo.org/methods)
Expected final version:
yes
Genome coverage:
74x
Sequencing technology:
HiSeq X Ten; Illumina NovaSeq 6000

IDs: 15905381 [UID] 40826878 [GenBank]

See Genome Information for Rhinoceros unicornis

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,631,998,212
Total ungapped length2,619,574,655
Gaps between scaffolds0
Number of scaffolds273,665
Scaffold N5056,870,999
Scaffold L5018
Number of contigs306,900
Contig N50105,810
Contig L506,990
Total number of chromosomes and plasmids41
Number of component sequences (WGS or clone)273,665

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028646475.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM053518.1n/an/a0
Chromosome 2CM053519.1n/an/a0
Chromosome 3CM053520.1n/an/a0
Chromosome 4CM053521.1n/an/a0
Chromosome 5CM053522.1n/an/a0
Chromosome 6CM053523.1n/an/a0
Chromosome 7CM053524.1n/an/a0
Chromosome 8CM053525.1n/an/a0
Chromosome 9CM053526.1n/an/a0
Chromosome 10CM053527.1n/an/a0
Chromosome 11CM053528.1n/an/a0
Chromosome 12CM053529.1n/an/a0
Chromosome 13CM053530.1n/an/a0
Chromosome 14CM053531.1n/an/a0
Chromosome 15CM053532.1n/an/a0
Chromosome 16CM053533.1n/an/a0
Chromosome 17CM053534.1n/an/a0
Chromosome 18CM053535.1n/an/a0
Chromosome 19CM053536.1n/an/a0
Chromosome 20CM053537.1n/an/a0
Chromosome 21CM053538.1n/an/a0
Chromosome 22CM053539.1n/an/a0
Chromosome 23CM053540.1n/an/a0
Chromosome 24CM053541.1n/an/a0
Chromosome 25CM053542.1n/an/a0
Chromosome 26CM053543.1n/an/a0
Chromosome 27CM053544.1n/an/a0
Chromosome 28CM053545.1n/an/a0
Chromosome 29CM053546.1n/an/a0
Chromosome 30CM053547.1n/an/a0
Chromosome 31CM053548.1n/an/a0
Chromosome 32CM053549.1n/an/a0
Chromosome 33CM053550.1n/an/a0
Chromosome 34CM053551.1n/an/a0
Chromosome 35CM053552.1n/an/a0
Chromosome 36CM053553.1n/an/a0
Chromosome 37CM053554.1n/an/a0
Chromosome 38CM053555.1n/an/a0
Chromosome 39CM053556.1n/an/a0
Chromosome 40CM053557.1n/an/a0
Chromosome 41CM053558.1n/an/a0
unplacedn/an/an/a273,624

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,631,998,212273,6652,619,574,65556,870,99933,2350
Chromosome 192,586,544192,074,94492,586,5441,3040
Chromosome 270,895,514170,555,61470,895,5148630
Chromosome 352,129,876151,847,57652,129,8767310
Chromosome 457,906,400157,608,40057,906,4007680
Chromosome 576,362,422175,978,52276,362,4229750
Chromosome 661,179,129160,848,62961,179,1298290
Chromosome 776,740,112176,345,61276,740,1121,0090
Chromosome 877,624,979177,232,37977,624,9791,0060
Chromosome 957,884,785157,589,66257,884,7857630
Chromosome 1080,714,217180,311,61780,714,2171,0620
Chromosome 1147,672,724147,415,92447,672,7246680
Chromosome 1257,916,522157,592,92257,916,5228400
Chromosome 1381,540,559181,133,35981,540,5591,0640
Chromosome 1465,616,318165,302,41865,616,3188150
Chromosome 1535,359,240135,166,24035,359,2404740
Chromosome 1639,062,283138,839,58339,062,2835630
Chromosome 1746,262,397146,035,69746,262,3976190
Chromosome 1847,047,490146,780,49047,047,4906940
Chromosome 1942,286,649142,075,24942,286,6495460
Chromosome 2039,086,415138,894,01539,086,4154800
Chromosome 2125,548,272125,415,47225,548,2723680
Chromosome 2213,603,701113,523,40113,603,7012030
Chromosome 2328,582,721128,397,22128,582,7214670
Chromosome 2428,465,324128,238,32428,465,3245740
Chromosome 2533,169,607132,979,70733,169,6074790
Chromosome 2624,890,006124,751,00624,890,0063500
Chromosome 2728,335,620128,184,32028,335,6203850
Chromosome 2834,871,181134,707,88134,871,1814290
Chromosome 2925,747,488125,596,88825,747,4883900
Chromosome 3050,265,630149,989,03050,265,6306980
Chromosome 3113,994,344113,874,04413,994,3443150
Chromosome 3253,282,190153,006,99053,282,1907080
Chromosome 3381,116,973180,725,07381,116,9731,0350
Chromosome 3436,644,267136,435,56736,644,2675470
Chromosome 3556,870,999156,600,69956,870,9997190
Chromosome 3690,415,327189,957,02790,415,3271,1990
Chromosome 3731,391,370131,227,37031,391,3704200
Chromosome 3832,544,144132,339,04432,544,1444950
Chromosome 3968,429,977168,073,37768,429,9778980
Chromosome 40101,548,5661101,022,832101,548,5661,3650
Chromosome 4199,299,368197,992,86899,299,3683,5610
unplaced467,106,562273,624466,907,662223,8071,5570