U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



bAmaOch1.hap2

Organism name:
Amazona ochrocephala (yellow-crowned parrot)
Isolate:
bAmaOch1
Sex:
female
BioSample:
SAMN41018448
BioProject:
PRJNA1102368
Submitter:
Vertebrate Genomes Project
Date:
2024/05/24
Assembly type:
haploid (haplotype 2)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_039720425.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JBCFXH01
Assembly method:
Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; yahs v. 1.2a.2 + galaxy1
Expected final version:
no
Genome coverage:
37.4x
Sequencing technology:
PacBio Sequel II HiFi; Arima Hi-C v2
Linked assembly:
GCA_039720435.1 (haplotype 1)

IDs: 22690011 [UID] 59087858 [GenBank]

See Genome Information for Amazona ochrocephala

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,356,986,306
Total ungapped length1,356,960,406
Gaps between scaffolds0
Number of scaffolds2,468
Scaffold N5074,103,573
Scaffold L507
Number of contigs2,606
Contig N5014,697,220
Contig L5029
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)2,468

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_039720445.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM077846.1n/an/a0
Chromosome 2CM077847.1n/an/a0
Chromosome 3CM077848.1n/an/a1
Chromosome 4CM077849.1n/an/a3
Chromosome 5CM077850.1n/an/a0
Chromosome 6CM077851.1n/an/a0
Chromosome 7CM077852.1n/an/a0
Chromosome 8CM077853.1n/an/a0
Chromosome 9CM077854.1n/an/a16
Chromosome 10CM077855.1n/an/a0
Chromosome 11CM077856.1n/an/a0
Chromosome 12CM077857.1n/an/a0
Chromosome 13CM077858.1n/an/a0
Chromosome 14CM077859.1n/an/a0
Chromosome 15CM077860.1n/an/a0
Chromosome 16CM077861.1n/an/a0
Chromosome 17CM077862.1n/an/a0
Chromosome 18CM077863.1n/an/a0
Chromosome 19CM077864.1n/an/a2
Chromosome 20CM077865.1n/an/a0
Chromosome 21CM077866.1n/an/a0
Chromosome 22CM077867.1n/an/a0
Chromosome 23CM077868.1n/an/a0
Chromosome 24CM077869.1n/an/a0
Chromosome 25CM077870.1n/an/a0
Chromosome 26CM077871.1n/an/a0
Chromosome 27CM077872.1n/an/a0
Chromosome 29CM077873.1n/an/a0
Chromosome 30CM077874.1n/an/a0
Chromosome 32CM077875.1n/an/a0
unplacedn/an/an/a2,416

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,356,986,3062,4681,356,960,40674,103,5731380
Chromosome 1Assembled molecule138,915,1101138,912,610138,915,110140
Chromosome 2Assembled molecule133,335,0161133,331,716133,335,016170
Chromosome 3AllAssembled moleculeUnlocalized scaffolds128,651,807127,667,134984,673211128,648,907127,664,234984,673127,667,134127,667,134984,67317170000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds97,630,89495,351,7752,279,11941397,628,99495,349,8752,279,11995,351,77595,351,7751,266,13911110000
Chromosome 5Assembled molecule92,530,657192,529,65792,530,65750
Chromosome 6Assembled molecule85,983,822185,982,82285,983,82250
Chromosome 7Assembled molecule74,103,573174,101,77374,103,57390
Chromosome 8Assembled molecule46,195,990146,195,79046,195,99010
Chromosome 9AllAssembled moleculeUnlocalized scaffolds48,674,72940,654,0768,020,6531711648,673,32940,652,6768,020,65340,654,07640,654,076485,079770000
Chromosome 10Assembled molecule32,019,202132,018,40232,019,20240
Chromosome 11Assembled molecule26,488,616126,488,61626,488,61600
Chromosome 12Assembled molecule25,334,387125,334,38725,334,38700
Chromosome 13Assembled molecule25,794,436125,794,23625,794,43610
Chromosome 14Assembled molecule21,190,006121,190,00621,190,00600
Chromosome 15Assembled molecule17,632,997117,632,99717,632,99700
Chromosome 16Assembled molecule15,760,588115,760,58815,760,58800
Chromosome 17Assembled molecule13,728,436113,727,83613,728,43640
Chromosome 18Assembled molecule12,161,866112,161,86612,161,86600
Chromosome 19AllAssembled moleculeUnlocalized scaffolds15,017,07814,390,723626,35531215,017,07814,390,723626,35514,390,72314,390,723443,169000000
Chromosome 20Assembled molecule7,733,91317,733,9137,733,91300
Chromosome 21Assembled molecule7,558,53117,558,5317,558,53100
Chromosome 22Assembled molecule5,905,42815,905,0285,905,42820
Chromosome 23Assembled molecule5,590,31915,590,0195,590,31920
Chromosome 24Assembled molecule3,695,95013,694,7503,695,95060
Chromosome 25Assembled molecule2,685,38412,683,9842,685,38470
Chromosome 26Assembled molecule1,039,30411,038,3041,039,30450
Chromosome 27Assembled molecule331,6191331,219331,61920
Chromosome 29Assembled molecule555,3061554,806555,30630
Chromosome 30Assembled molecule342,6681342,468342,66810
Chromosome 32Assembled molecule582,5731581,073582,57380
unplacedAssembled molecule269,816,1012,416269,814,701150,83270