U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM4005753v1

Organism name:
Rhinolophus affinis (intermediate horseshoe bat)
BioSample:
SAMN36405434
BioProject:
PRJNA993631
Submitter:
Shaanxi Normal University
Date:
2024/06/04
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_040057535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAUKPG01
Assembly method:
NextDenovo v. 2.4.0
Expected final version:
yes
Genome coverage:
76.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 22817061 [UID] 59431758 [GenBank]

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,025,198,401
Total ungapped length2,024,443,788
Gaps between scaffolds0
Number of scaffolds60
Scaffold N5092,909,886
Scaffold L5010
Number of contigs21,259
Contig N50201,316
Contig L502,245
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)60

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_040057565.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM078687.1n/an/a0
Chromosome 2CM078688.1n/an/a0
Chromosome 3CM078689.1n/an/a0
Chromosome 4CM078690.1n/an/a0
Chromosome 5CM078691.1n/an/a0
Chromosome 6CM078692.1n/an/a0
Chromosome 7CM078693.1n/an/a0
Chromosome 8CM078694.1n/an/a0
Chromosome 9CM078695.1n/an/a0
Chromosome 10CM078696.1n/an/a0
Chromosome 11CM078697.1n/an/a0
Chromosome 12CM078698.1n/an/a0
Chromosome 13CM078699.1n/an/a0
Chromosome 14CM078700.1n/an/a0
Chromosome 15CM078701.1n/an/a0
Chromosome 16CM078702.1n/an/a0
Chromosome 17CM078703.1n/an/a0
Chromosome 18CM078704.1n/an/a0
Chromosome 19CM078705.1n/an/a0
Chromosome 20CM078706.1n/an/a0
Chromosome 21CM078707.1n/an/a0
Chromosome 22CM078708.1n/an/a0
Chromosome 23CM078709.1n/an/a0
Chromosome 24CM078710.1n/an/a0
Chromosome 25CM078711.1n/an/a0
Chromosome 26CM078712.1n/an/a0
Chromosome 27CM078713.1n/an/a0
Chromosome 28CM078714.1n/an/a0
Chromosome 29CM078715.1n/an/a0
Chromosome 30CM078716.1n/an/a0
Chromosome XCM078717.1n/an/a0
Chromosome YCM078718.1n/an/a0
unplacedn/an/an/a28

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,025,198,401602,024,443,78892,909,88621,1990
Chromosome 1107,778,5281107,744,276107,778,5281,2080
Chromosome 2107,084,9331107,041,199107,084,9331,4830
Chromosome 3105,906,7701105,862,094105,906,7701,3030
Chromosome 4105,188,5141105,166,330105,188,5147670
Chromosome 5100,631,9831100,597,611100,631,9839320
Chromosome 699,651,357199,625,58599,651,3577690
Chromosome 799,099,273199,074,80599,099,2737190
Chromosome 893,014,174192,969,08993,014,1741,1400
Chromosome 992,909,886192,894,86192,909,8862080
Chromosome 1086,252,518186,214,45986,252,5181,1760
Chromosome 1182,713,850182,695,87782,713,8503730
Chromosome 1276,698,100176,673,01676,698,1007190
Chromosome 1367,363,175167,343,58567,363,1753730
Chromosome 1466,777,052166,760,34466,777,0523180
Chromosome 1561,115,272161,096,67661,115,2725340
Chromosome 1658,926,436158,910,53458,926,4365240
Chromosome 1757,037,439157,020,95557,037,4394790
Chromosome 1853,568,887153,540,59953,568,8876340
Chromosome 1950,234,432150,211,91450,234,4325070
Chromosome 2045,098,889145,075,63345,098,8895960
Chromosome 2143,902,887143,889,46043,902,8873260
Chromosome 2239,840,527139,821,96839,840,5275960
Chromosome 2338,872,647138,850,69038,872,6475730
Chromosome 2430,216,320130,203,96130,216,3203030
Chromosome 2528,745,580128,733,79028,745,5804490
Chromosome 2627,326,383127,316,69027,326,3832440
Chromosome 2726,497,796126,484,24126,497,7962780
Chromosome 2825,450,527125,439,43325,450,5273250
Chromosome 2918,953,332118,945,44718,953,3321520
Chromosome 3016,692,384116,685,61416,692,3841370
Chromosome X106,770,4171106,688,753106,770,4172,8710
Chromosome Y4,481,00214,467,5144,481,0021780
unplaced397,13128396,78562,71550