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Source database (GenBank or RefSeq) File type

GC Assembler

Anomalous assembly.

Organism name:

Lactiplantibacillus plantarum EGD-AQ4 (firmicutes)

Taxonomy check:

Failed

Infraspecific name:

Strain: EGD-AQ4

BioSample:

SAMN02469688

BioProject:

PRJNA214308

Submitter:

National Environmental Engineering Research Institute-CSIR

Date:

2013/08/23

Assembly type:

Release type:

minor

Assembly level:

Contig

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_000463075.2 (latest)

RefSeq assembly accession:

GCF_000463075.2 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AVAQ01

Assembly method:

CLC NGS Cell v. 07-Jan-2013

Expected final version:

yes

Genome coverage:

66.0x

Sequencing technology:

Illumina MiSeq

IDs: 568361 [UID] 2548748 [GenBank] 2607978 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1299 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000463075.2	=	GCF_000463075.2	GC Assembler	Contig	Latest GenBank, RefSeq suppressed
GCA_000463075.1	=	GCF_000463075.1	GC Assembler	Contig	Replaced GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Environmental Genomics Division, CSIR-NEERI, Nagpur, India. Source DNA available from Environmental Genomics Division, CSIR-NEERI, Nagpur, India.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/08/2013 11:07:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.1 (rev. 409245)
Features Annotated::Gene; CDS; rRNA; tRNA; repeat_region
Genes::3,135
CDS::3,035
Pseudo Genes::37
CRISPR Arrays::5
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::60
Frameshifted Genes::24
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,414,633
Total ungapped length	3,414,633
Number of contigs	51
Contig N50	143,220
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	51

	ANI	Query coverage	Subject coverage
Declared type	82.90	41.96	44.09
Best-match type	93.16	85.98	82.89

Assembly

Genome Assembly

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GC Assembler

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1299 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result