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ASM333112v1

Organism name:
Anaplasma marginale (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MEX-01-001-01
BioSample:
SAMN09425886
BioProject:
PRJNA476110
Submitter:
INIFAP
Date:
2018/07/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003331125.1 (latest)
RefSeq assembly accession:
GCF_003331125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QLIV01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
36.0x
Sequencing technology:
Illumina HiSeq

IDs: 1826081 [UID] 6922418 [GenBank] 6937368 [RefSeq]

See Genome Information for Anaplasma marginale

Pathogen Detection Resources

There are 24 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Unidad de Anaplasmosis, CENID-PAVET, INIFAP.
This project was originally submitted as Anaplasma marginale strain ... INIFAP09. The organism name was changed to Anaplasma marginale strain MEX-01-001-01 in September 2018.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/15/2018 16:07:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,053
CDS (total)::1,009
Genes (coding)::969
CDS (coding)::969
Genes (RNA)::44
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::37
ncRNAs::4
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::13 of 40
Pseudo Genes (incomplete)::27 of 40
Pseudo Genes (internal stop)::4 of 40
Pseudo Genes (multiple problems)::4 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,179,425
Total ungapped length1,179,425
Number of contigs34
Contig N5065,428
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,179,425341,179,42565,42800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaplasma marginaleAnaplasma marginale

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000215485.2Anaplasma marginale str. Floridareftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000215485.2Anaplasma marginalereftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0195.3598.91
Best-match type99.0195.3598.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna