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ASM799701v1

Organism name:
Lujinxingia vulgaris (d-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TMQ4
BioSample:
SAMN12418627
BioProject:
PRJNA557791
Submitter:
Shandong University at Weihai
Date:
2019/08/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007997015.1 (latest)
RefSeq assembly accession:
GCF_007997015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VOSM01
Assembly method:
ABySS v. 2.0.2
Expected final version:
yes
Genome coverage:
346.0x
Sequencing technology:
Illumina HiSeq

IDs: 4338441 [UID] 13194758 [GenBank] 13208348 [RefSeq]

See Genome Information for Lujinxingia vulgaris

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from the Lab of Zong-jun Du
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2019 21:32:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,235
CDSs (total)::4,167
Genes (coding)::4,086
CDSs (with protein)::4,086
Genes (RNA)::68
rRNAs::5, 3, 4 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::4, 2, 3 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::81
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 81
Pseudo Genes (frameshifted)::7 of 81
Pseudo Genes (incomplete)::75 of 81
Pseudo Genes (internal stop)::6 of 81
Pseudo Genes (multiple problems)::7 of 81
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,553,159
Total ungapped length5,553,159
Number of contigs121
Contig N50568,134
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)121

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,553,1591215,553,159568,13400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lujinxingia vulgarisLujinxingia vulgaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004005565.1Lujinxingia sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.3278.5881.88

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected