Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM1297923v1

Organism name:: Dissulfurirhabdus thermomarina (d-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SH388
BioSample:: SAMN14464895
BioProject:: PRJNA615684
Submitter:: IUEM
Date:: 2020/05/06
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_012979235.1 (latest)
RefSeq assembly accession:: GCF_012979235.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAATWC01
Assembly method:: Unicycler v. 0.4.8-beta
Expected final version:: yes
Genome coverage:: 1384.0x
Sequencing technology:: Illumina MiSeq

IDs: 7064211 [UID] 19433438 [GenBank] 19464858 [RefSeq]

See Genome Information for Dissulfurirhabdus thermomarina

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_012979235.1	=	GCF_012979235.1	ASM1297923v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::03/27/2020 20:29:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,321
CDSs (total)::2,267
Genes (coding)::2,238
CDSs (with protein)::2,238
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::29
CDSs (without protein)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::2 of 29
Pseudo Genes (incomplete)::26 of 29
Pseudo Genes (internal stop)::1 of 29
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,461,349
Total ungapped length	2,461,349
Number of contigs	34
Contig N50	240,491
Contig L50	3
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	34

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.50	95.32
Best-match type	99.98	99.50	95.32

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM1297923v1

See Genome Information for Dissulfurirhabdus thermomarina

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result